Difference between revisions of "Sporulation"
(→Sporulation proteins/ other) |
(→Important original publications) |
||
| (91 intermediate revisions by 5 users not shown) | |||
| Line 18: | Line 18: | ||
=== Spore coat proteins === | === Spore coat proteins === | ||
| − | * ''[[ | + | ==== Class I ==== |
| + | * these proteins completly cover the membrane around the forespore | ||
| + | * early localizing spore coat proteins | ||
| + | |||
| + | * ''[[spoIVA]]'' | ||
| + | * ''[[spoVM]]'' | ||
| + | * ''[[spoVID]]'' | ||
| + | * ''[[yaaH]]'' | ||
| + | * ''[[yhaX]]'' | ||
| + | * ''[[yuzC]]'' | ||
| + | |||
| + | ==== Class II ==== | ||
| + | * these proteins localize simultaneously with the class I proteins but begin to encase the spore only after engulfment is complete | ||
| + | * early localizing spore coat proteins | ||
| + | |||
| + | * ''[[cotE]]'' | ||
| + | * ''[[cotM]]'' | ||
| + | * ''[[cotO]]'' | ||
| + | * ''[[yncD]]'' | ||
| + | * ''[[yheD]]'' | ||
| + | * ''[[yknT]]'' | ||
| + | * ''[[yhjR]]'' | ||
| + | |||
| + | ==== Class III ==== | ||
| + | * these proteins localize simultaneously with the class I and class II proteins but start to encase the spore only after the appearance of phase dark spores (hr 4.5) | ||
| + | * early localizing spore coat proteins | ||
| + | |||
| + | * ''[[cotZ]]'' | ||
| + | * ''[[cwlJ]]'' | ||
| + | * ''[[tgl]]'' | ||
| + | * ''[[yisY]]'' | ||
| + | * ''[[ysxE]]'' | ||
| + | * ''[[yutH]]'' | ||
| + | |||
| + | ==== Class IV ==== | ||
| + | * late localizing spore coat proteins (only after completion of engulfment) | ||
| + | * intermediate between classes III and V | ||
| + | |||
| + | * ''[[cotT]]'' | ||
| + | * ''[[ysnD]]'' | ||
| + | * ''[[yybI]]'' | ||
| + | |||
| + | ==== Class V ==== | ||
| + | * late localizing spore coat proteins (only after completion of engulfment) | ||
| + | * localize exclusively to phase dark spores | ||
| + | * localize simultaneously to both poles of the spore | ||
| + | |||
* ''[[cotA]]'' | * ''[[cotA]]'' | ||
* ''[[cotB]]'' | * ''[[cotB]]'' | ||
| + | * ''[[cotG]]'' | ||
| + | * ''[[cotP]]'' | ||
| + | * ''[[cotQ]]'' | ||
| + | * ''[[cotS]]'' | ||
| + | * ''[[cotW]]'' | ||
| + | * ''[[lipC]]'' | ||
| + | * ''[[oxdD]]'' | ||
| + | * ''[[yeeK]]'' | ||
| + | * ''[[yjzB]]'' | ||
| + | * ''[[ylbD]]'' | ||
| + | * ''[[ymaG]]'' | ||
| + | * ''[[yppG]]'' | ||
| + | * ''[[yqjC]]'' | ||
| + | * ''[[ytxO]]'' | ||
| + | * ''[[yxeE]]'' | ||
| + | |||
| + | ==== Class VI ==== | ||
| + | * late localizing spore coat proteins (only after completion of engulfment) | ||
| + | * most delayed initial localization | ||
| + | * localize excluseively to phase bright spores | ||
| + | |||
| + | * ''[[cotD]]'' | ||
| + | * ''[[cotU]]'' | ||
| + | |||
| + | ==== not yet assigned ==== | ||
| + | * ''[[cgeA]]'' | ||
| + | * ''[[cgeB]]'' | ||
| + | * ''[[cgeC]]'' | ||
| + | * ''[[cgeD]]'' | ||
| + | * ''[[cgeE]]'' | ||
| + | * ''[[cmpA]]'' | ||
* ''[[cotC]]'' | * ''[[cotC]]'' | ||
| − | |||
| − | |||
* ''[[cotF]]'' | * ''[[cotF]]'' | ||
| − | |||
* ''[[cotH]]'' | * ''[[cotH]]'' | ||
* ''[[cotI]]'' | * ''[[cotI]]'' | ||
| Line 31: | Line 105: | ||
* ''[[cotJB]]'' | * ''[[cotJB]]'' | ||
* ''[[cotJC]]'' | * ''[[cotJC]]'' | ||
| − | * ''[[ | + | * ''[[cotR]]'' |
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[cotSA]]'' | * ''[[cotSA]]'' | ||
| − | |||
| − | |||
* ''[[cotV]]'' | * ''[[cotV]]'' | ||
| − | |||
* ''[[cotX]]'' | * ''[[cotX]]'' | ||
* ''[[cotY]]'' | * ''[[cotY]]'' | ||
| − | |||
* ''[[gerQ]]'' | * ''[[gerQ]]'' | ||
* ''[[gerR]]'' | * ''[[gerR]]'' | ||
* ''[[gerT]]'' | * ''[[gerT]]'' | ||
| − | * ''[[ | + | * ''[[ldt]]'' |
| − | * ''[[ | + | * ''[[safA]]'' |
| − | * ''[[ | + | * ''[[spsB]]'' |
| − | * ''[[ | + | * ''[[yabG]]'' |
| − | * ''[[ | + | * ''[[ygaK]]'' |
| − | * ''[[ | + | * ''[[ydhD]]'' |
| − | * ''[[ | + | * ''[[yhbB]]'' |
| − | * ''[[ | + | * ''[[yheC]]'' |
| + | * ''[[yisJ]]'' | ||
| + | * ''[[yjdH]]'' | ||
| + | * ''[[ykvP]]'' | ||
| + | * ''[[yobN]]'' | ||
| + | * ''[[yodI]]'' | ||
| + | * ''[[ypeP]]'' | ||
| + | * ''[[yqfT]]'' | ||
| + | * ''[[ywqH]]'' | ||
| + | |||
| + | ====Important publications on the spore coat==== | ||
| + | <pubmed> 22171814 20451384 22192522 23202530 22262582 24283940 26512126 27790212</pubmed> | ||
=== Spore coat protein/ based on similarity === | === Spore coat protein/ based on similarity === | ||
| Line 79: | Line 156: | ||
* ''[[sspO]]'' | * ''[[sspO]]'' | ||
* ''[[sspP]]'' | * ''[[sspP]]'' | ||
| + | |||
| + | === Non-homologous end joining DNA repair === | ||
| + | * ''[[ligD]]'' | ||
| + | * ''[[ykoV]]'' | ||
| + | |||
| + | === Utilization of specific carbon sources=== | ||
| + | * ''[[hbuT]]'' | ||
| + | * ''[[mmgA]]'' | ||
| + | * ''[[mmgB]]'' | ||
| + | * ''[[mmgC]]'' | ||
| + | * ''[[mmgD]]'' | ||
| + | * ''[[mmgE]]'' | ||
| + | * ''[[scoA]]'' | ||
| + | * ''[[scoB]]'' | ||
| + | * ''[[yqiQ]]'' | ||
| + | * ''[[yxjF]]'' | ||
=== Sporulation proteins/ other === | === Sporulation proteins/ other === | ||
| Line 90: | Line 183: | ||
* ''[[bofC]]'' | * ''[[bofC]]'' | ||
* ''[[ccpB]]'' | * ''[[ccpB]]'' | ||
| − | * ''[[ | + | * ''[[cdaS]]'' |
| − | |||
| − | |||
| − | |||
* ''[[chaA]]'' | * ''[[chaA]]'' | ||
* ''[[clpC]]'' | * ''[[clpC]]'' | ||
| − | + | ||
* ''[[coxA]]'' | * ''[[coxA]]'' | ||
* ''[[csbX]]'' | * ''[[csbX]]'' | ||
| + | * ''[[csfB]]'' | ||
* ''[[ctaA]]'' | * ''[[ctaA]]'' | ||
* ''[[ctpB]]'' | * ''[[ctpB]]'' | ||
* ''[[cwlC]]'' | * ''[[cwlC]]'' | ||
| + | * ''[[cwlD]]'' | ||
* ''[[cwlH]]'' | * ''[[cwlH]]'' | ||
* ''[[dacB]]'' | * ''[[dacB]]'' | ||
| Line 114: | Line 206: | ||
* ''[[fabL]]'' | * ''[[fabL]]'' | ||
* ''[[fin]]'' | * ''[[fin]]'' | ||
| + | * ''[[fisB]]'' | ||
* ''[[ftsY]]'' | * ''[[ftsY]]'' | ||
| − | + | ||
* ''[[glcU]]'' | * ''[[glcU]]'' | ||
* ''[[glgA]]'' | * ''[[glgA]]'' | ||
| Line 126: | Line 219: | ||
* ''[[glnP]]'' | * ''[[glnP]]'' | ||
* ''[[glnQ]]'' | * ''[[glnQ]]'' | ||
| + | * ''[[htrC]]'' | ||
* ''[[ispG]]'' | * ''[[ispG]]'' | ||
* ''[[kamA]]'' | * ''[[kamA]]'' | ||
* ''[[katX]]'' | * ''[[katX]]'' | ||
| − | |||
| − | |||
* ''[[lonB]]'' | * ''[[lonB]]'' | ||
* ''[[lysA]]'' | * ''[[lysA]]'' | ||
| Line 137: | Line 229: | ||
* ''[[mcsA]]'' | * ''[[mcsA]]'' | ||
* ''[[mcsB]]'' | * ''[[mcsB]]'' | ||
| − | + | ||
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[murB]]'' | * ''[[murB]]'' | ||
* ''[[murG]]'' | * ''[[murG]]'' | ||
| Line 149: | Line 237: | ||
* ''[[pbpG]]'' | * ''[[pbpG]]'' | ||
* ''[[pbpI]]'' | * ''[[pbpI]]'' | ||
| + | * ''[[pdaA]]'' | ||
* ''[[pdaB]]'' | * ''[[pdaB]]'' | ||
| + | * ''[[pghL]]'' | ||
* ''[[phoB]]'' | * ''[[phoB]]'' | ||
* ''[[phoP]]'' | * ''[[phoP]]'' | ||
* ''[[phoR]]'' | * ''[[phoR]]'' | ||
* ''[[prkA]]'' | * ''[[prkA]]'' | ||
| + | * ''[[remA]]'' | ||
* ''[[rsfA]]'' | * ''[[rsfA]]'' | ||
| − | + | ||
* ''[[sbp]]'' | * ''[[sbp]]'' | ||
| − | + | ||
| − | |||
* ''[[seaA]]'' | * ''[[seaA]]'' | ||
* ''[[sigF]]'' | * ''[[sigF]]'' | ||
| Line 180: | Line 270: | ||
* ''[[spoIIIC]]'' | * ''[[spoIIIC]]'' | ||
* ''[[spoIIID]]'' | * ''[[spoIIID]]'' | ||
| + | * ''[[spoIIIL]]'' | ||
* ''[[spoIIM]]'' | * ''[[spoIIM]]'' | ||
* ''[[spoIIP]]'' | * ''[[spoIIP]]'' | ||
* ''[[spoIIQ]]'' | * ''[[spoIIQ]]'' | ||
| + | * ''[[spoIIT]]'' | ||
* ''[[spoIIR]]'' | * ''[[spoIIR]]'' | ||
* ''[[spoIISA]]'' | * ''[[spoIISA]]'' | ||
| Line 194: | Line 286: | ||
* ''[[spoVAB]]'' | * ''[[spoVAB]]'' | ||
* ''[[spoVAC]]'' | * ''[[spoVAC]]'' | ||
| − | |||
* ''[[spoVAF]]'' | * ''[[spoVAF]]'' | ||
* ''[[spoVB]]'' | * ''[[spoVB]]'' | ||
| Line 201: | Line 292: | ||
* ''[[spoVFA]]'' | * ''[[spoVFA]]'' | ||
* ''[[spoVFB]]'' | * ''[[spoVFB]]'' | ||
| − | + | ||
* ''[[spoVIF]]'' | * ''[[spoVIF]]'' | ||
* ''[[spoVK]]'' | * ''[[spoVK]]'' | ||
| − | + | ||
* ''[[spoVR]]'' | * ''[[spoVR]]'' | ||
* ''[[spoVT]]'' | * ''[[spoVT]]'' | ||
| + | * ''[[sprB]]'' | ||
* ''[[spsA]]'' | * ''[[spsA]]'' | ||
| − | + | ||
* ''[[spsC]]'' | * ''[[spsC]]'' | ||
* ''[[spsD]]'' | * ''[[spsD]]'' | ||
| Line 221: | Line 313: | ||
* ''[[sscA]]'' | * ''[[sscA]]'' | ||
* ''[[stoA]]'' | * ''[[stoA]]'' | ||
| − | + | ||
* ''[[tlp]]'' | * ''[[tlp]]'' | ||
* ''[[tuaF]]'' | * ''[[tuaF]]'' | ||
| Line 230: | Line 322: | ||
* ''[[uxaB]]'' | * ''[[uxaB]]'' | ||
* ''[[uxuA]]'' | * ''[[uxuA]]'' | ||
| − | + | ||
* ''[[yabP]]'' | * ''[[yabP]]'' | ||
* ''[[yabQ]]'' | * ''[[yabQ]]'' | ||
| Line 247: | Line 339: | ||
* ''[[ydgA]]'' | * ''[[ydgA]]'' | ||
* ''[[ydgB]]'' | * ''[[ydgB]]'' | ||
| − | + | ||
* ''[[ydhF]]'' | * ''[[ydhF]]'' | ||
* ''[[ydjP]]'' | * ''[[ydjP]]'' | ||
| Line 259: | Line 351: | ||
* ''[[yfnH]]'' | * ''[[yfnH]]'' | ||
* ''[[yhaL]]'' | * ''[[yhaL]]'' | ||
| − | + | ||
* ''[[yhbH]]'' | * ''[[yhbH]]'' | ||
* ''[[yhcM]]'' | * ''[[yhcM]]'' | ||
| Line 266: | Line 358: | ||
* ''[[yhcQ]]'' | * ''[[yhcQ]]'' | ||
* ''[[yhcV]]'' | * ''[[yhcV]]'' | ||
| − | + | ||
| − | + | ||
* ''[[yhfM]]'' | * ''[[yhfM]]'' | ||
* ''[[yhfW]]'' | * ''[[yhfW]]'' | ||
| − | + | ||
* ''[[yhxC]]'' | * ''[[yhxC]]'' | ||
| − | + | ||
* ''[[yisZ]]'' | * ''[[yisZ]]'' | ||
* ''[[yitA]]'' | * ''[[yitA]]'' | ||
| Line 283: | Line 375: | ||
* ''[[yjbA]]'' | * ''[[yjbA]]'' | ||
* ''[[yjcA]]'' | * ''[[yjcA]]'' | ||
| − | + | ||
* ''[[yjfA]]'' | * ''[[yjfA]]'' | ||
* ''[[yjmC]]'' | * ''[[yjmC]]'' | ||
* ''[[yjmD]]'' | * ''[[yjmD]]'' | ||
* ''[[yjmF]]'' | * ''[[yjmF]]'' | ||
| − | + | ||
| − | |||
| − | |||
* ''[[ykvI]]'' | * ''[[ykvI]]'' | ||
| − | + | ||
* ''[[ykvQ]]'' | * ''[[ykvQ]]'' | ||
| + | * ''[[ykzQ]]'' | ||
* ''[[ylaJ]]'' | * ''[[ylaJ]]'' | ||
| + | * ''[[ylaM]]'' | ||
* ''[[ylbB]]'' | * ''[[ylbB]]'' | ||
* ''[[ylbC]]'' | * ''[[ylbC]]'' | ||
| − | + | ||
* ''[[ylbE]]'' | * ''[[ylbE]]'' | ||
* ''[[ylbJ]]'' | * ''[[ylbJ]]'' | ||
| + | * ''[[ylmC]]'' | ||
* ''[[ylxW]]'' | * ''[[ylxW]]'' | ||
* ''[[ylxX]]'' | * ''[[ylxX]]'' | ||
| − | * ''[[ | + | * ''[[ylyA]]'' |
| + | |||
| + | * ''[[ymxH]]'' | ||
* ''[[yndA]]'' | * ''[[yndA]]'' | ||
| − | + | ||
* ''[[yngE]]'' | * ''[[yngE]]'' | ||
* ''[[yngF]]'' | * ''[[yngF]]'' | ||
* ''[[yngG]]'' | * ''[[yngG]]'' | ||
* ''[[yngH]]'' | * ''[[yngH]]'' | ||
| + | * ''[[yngHB]]'' | ||
* ''[[yngI]]'' | * ''[[yngI]]'' | ||
* ''[[yngJ]]'' | * ''[[yngJ]]'' | ||
| Line 316: | Line 412: | ||
* ''[[yocL]]'' | * ''[[yocL]]'' | ||
* ''[[yodH]]'' | * ''[[yodH]]'' | ||
| − | + | ||
* ''[[yodP]]'' | * ''[[yodP]]'' | ||
* ''[[yodQ]]'' | * ''[[yodQ]]'' | ||
| Line 322: | Line 418: | ||
* ''[[yodS]]'' | * ''[[yodS]]'' | ||
* ''[[yodT]]'' | * ''[[yodT]]'' | ||
| + | |||
* ''[[yokU]]'' | * ''[[yokU]]'' | ||
* ''[[yozQ]]'' | * ''[[yozQ]]'' | ||
| − | + | ||
* ''[[ypfB]]'' | * ''[[ypfB]]'' | ||
* ''[[yphA]]'' | * ''[[yphA]]'' | ||
| Line 341: | Line 438: | ||
* ''[[yqhP]]'' | * ''[[yqhP]]'' | ||
* ''[[yqhQ]]'' | * ''[[yqhQ]]'' | ||
| − | + | ||
* ''[[yqxA]]'' | * ''[[yqxA]]'' | ||
* ''[[yqzG]]'' | * ''[[yqzG]]'' | ||
| Line 347: | Line 444: | ||
* ''[[yrrD]]'' | * ''[[yrrD]]'' | ||
* ''[[yrrS]]'' | * ''[[yrrS]]'' | ||
| − | * ''[[ | + | * ''[[ytaF]]'' |
* ''[[ytcC]]'' | * ''[[ytcC]]'' | ||
* ''[[yteA]]'' | * ''[[yteA]]'' | ||
* ''[[yteV]]'' | * ''[[yteV]]'' | ||
* ''[[ytfI]]'' | * ''[[ytfI]]'' | ||
| − | + | ||
* ''[[ytlA]]'' | * ''[[ytlA]]'' | ||
* ''[[ytlC]]'' | * ''[[ytlC]]'' | ||
| Line 361: | Line 458: | ||
* ''[[ytxC]]'' | * ''[[ytxC]]'' | ||
* ''[[yuiC]]'' | * ''[[yuiC]]'' | ||
| − | + | ||
* ''[[yurS]]'' | * ''[[yurS]]'' | ||
* ''[[yusN]]'' | * ''[[yusN]]'' | ||
* ''[[yuzA]]'' | * ''[[yuzA]]'' | ||
| − | + | ||
* ''[[yvdQ]]'' | * ''[[yvdQ]]'' | ||
* ''[[yveA]]'' | * ''[[yveA]]'' | ||
* ''[[ywcA]]'' | * ''[[ywcA]]'' | ||
* ''[[ywcB]]'' | * ''[[ywcB]]'' | ||
| + | * ''[[ywjD]]'' | ||
| + | * ''[[ywjE]]'' | ||
| + | |||
* ''[[ywnJ]]'' | * ''[[ywnJ]]'' | ||
* ''[[ywrJ]]'' | * ''[[ywrJ]]'' | ||
* ''[[yxeD]]'' | * ''[[yxeD]]'' | ||
| − | + | ||
| − | |||
* ''[[yyaC]]'' | * ''[[yyaC]]'' | ||
* ''[[yyaD]]'' | * ''[[yyaD]]'' | ||
| − | * ''[[ | + | |
| − | * ''[[ | + | === Newly identified sporulation proteins (based on transcription profiling) === |
| + | * ''[[abnA]]'' | ||
| + | * ''[[acdA]]'' | ||
| + | * ''[[acoA]]'' | ||
| + | * ''[[acoB]]'' | ||
| + | * ''[[acoC]]'' | ||
| + | * ''[[acoL]]'' | ||
| + | * ''[[acoR]]'' | ||
| + | * ''[[alkA]]'' | ||
| + | * ''[[amiE]]'' | ||
| + | * ''[[amyC]]'' | ||
| + | * ''[[amyD]]'' | ||
| + | * ''[[amyX]]'' | ||
| + | * ''[[araL]]'' | ||
| + | * ''[[araM]]'' | ||
| + | * ''[[bglS]]'' | ||
| + | * ''[[bmrC]]'' | ||
| + | * ''[[bmrD]]'' | ||
| + | * ''[[bpsA]]'' | ||
| + | * ''[[bpsB]]'' | ||
| + | * ''[[citA]]'' | ||
| + | * ''[[citH]]'' | ||
| + | * ''[[comER]]'' | ||
| + | * ''[[cypA]]'' | ||
| + | * ''[[degQ]]'' | ||
| + | * ''[[dtpT]]'' | ||
| + | * ''[[fadA]]'' | ||
| + | * ''[[fadF]]'' | ||
| + | * ''[[fadM]]'' | ||
| + | * ''[[fadN]]'' | ||
| + | * ''[[ggt]]'' | ||
| + | * ''[[hemZ]]'' | ||
| + | * ''[[ispA]]'' | ||
| + | * ''[[kapD]]'' | ||
| + | * ''[[kbl]]'' | ||
| + | * ''[[licA]]'' | ||
| + | * ''[[licB]]'' | ||
| + | * ''[[licC]]'' | ||
| + | * ''[[licH]]'' | ||
| + | * ''[[lplD]]'' | ||
| + | * ''[[mciZ]]'' | ||
| + | * ''[[mdxE]]'' | ||
| + | * ''[[mdxF]]'' | ||
| + | * ''[[mdxG]]'' | ||
| + | * ''[[melA]]'' | ||
| + | * ''[[msmE]]'' | ||
| + | * ''[[mstX]]'' | ||
| + | * ''[[murP]]'' | ||
| + | * ''[[murQ]]'' | ||
| + | * ''[[murR]]'' | ||
| + | * ''[[nrnB]]'' | ||
| + | * ''[[nagZ]]'' | ||
| + | * ''[[pgcM]]'' | ||
| + | * ''[[pucH]]'' | ||
| + | * ''[[racA]]'' | ||
| + | * ''[[tdh]]'' | ||
| + | * ''[[sigE]]'' | ||
| + | * ''[[spoIIE]]'' | ||
| + | * ''[[spoVC]]'' | ||
| + | * ''[[ugd]]'' | ||
| + | * ''[[xpaC]]'' | ||
| + | * ''[[yaaC]]'' | ||
| + | * ''[[yabS]]'' | ||
| + | * ''[[ybbC]]'' | ||
| + | * ''[[ybeF]]'' | ||
| + | * ''[[ybfJ]]'' | ||
| + | * ''[[ycgI]]'' | ||
| + | * ''[[ycgH]]'' | ||
| + | * ''[[ycgL]]'' | ||
| + | |||
| + | * ''[[yclG]]'' | ||
| + | * ''[[yczM]]'' | ||
| + | * ''[[ydzH]]'' | ||
| + | * ''[[ydzR]]'' | ||
| + | * ''[[yerA]]'' | ||
| + | * ''[[yetF]]'' | ||
| + | * ''[[yezF]]'' | ||
| + | * ''[[ygzA]]'' | ||
| + | * ''[[ygzC]]'' | ||
| + | * ''[[yfhM]]'' | ||
| + | * ''[[yfhS]]'' | ||
| + | * ''[[yflJ]]'' | ||
| + | * ''[[yflN]]'' | ||
| + | * ''[[yfmA]]'' | ||
| + | * ''[[yhaR]]'' | ||
| + | * ''[[yheA]]'' | ||
| + | * ''[[yhcT]]'' | ||
| + | * ''[[yhcW]]'' | ||
| + | * ''[[yhdB]]'' | ||
| + | * ''[[yhdC]]'' | ||
| + | * ''[[yhdF]]'' | ||
| + | * ''[[yheF]]'' | ||
| + | * ''[[yhfA]]'' | ||
| + | * ''[[yhfN]]'' | ||
| + | * ''[[yhjQ]]'' | ||
| + | * ''[[yhzD]]'' | ||
| + | * ''[[yhzF]]'' | ||
| + | * ''[[yisN]]'' | ||
| + | * ''[[yitE]]'' | ||
| + | * ''[[yitQ]]'' | ||
| + | * ''[[yizC]]'' | ||
| + | * ''[[yizD]]'' | ||
| + | * ''[[yjaU]]'' | ||
| + | * ''[[yjaZ]]'' | ||
| + | * ''[[yjbE]]'' | ||
| + | * ''[[yjnA]]'' | ||
| + | * ''[[yjqC]]'' | ||
| + | * ''[[yjzC]]'' | ||
| + | * ''[[yjzK]]'' | ||
| + | * ''[[ykjA]]'' | ||
| + | * ''[[ykoN]]'' | ||
| + | * ''[[ykoP]]'' | ||
| + | * ''[[ykoQ]]'' | ||
| + | * ''[[ykoS]]'' | ||
| + | * ''[[ykoT]]'' | ||
| + | * ''[[ykoY]]'' | ||
| + | * ''[[ykpC]]'' | ||
| + | * ''[[ykuS]]'' | ||
| + | * ''[[ykwB]]'' | ||
| + | * ''[[ykzD]]'' | ||
| + | * ''[[ykzE]]'' | ||
| + | * ''[[ykzH]]'' | ||
| + | * ''[[ylaK]]'' | ||
| + | * ''[[yloB]]'' | ||
| + | * ''[[ylxY]]'' | ||
| + | * ''[[ymaF]]'' | ||
| + | * ''[[ymfD]]'' | ||
| + | * ''[[ymfH]]'' | ||
| + | * ''[[ymfI]]'' | ||
| + | * ''[[ymfJ]]'' | ||
| + | * ''[[yndM]]'' | ||
| + | * ''[[ynfE]]'' | ||
| + | * ''[[yngK]]'' | ||
| + | * ''[[yngL]]'' | ||
| + | * ''[[ynzE]]'' | ||
| + | * ''[[yoaI]]'' | ||
| + | * ''[[yoaM]]'' | ||
| + | * ''[[yoaQ]]'' | ||
| + | * ''[[yoaU]]'' | ||
| + | * ''[[yocN]]'' | ||
| + | * ''[[yodU]]'' | ||
| + | * ''[[yodL]]'' | ||
| + | * ''[[yodN]]'' | ||
| + | * ''[[yojB]]'' | ||
| + | * ''[[yoqH]]'' | ||
| + | * ''[[yosA]]'' | ||
| + | * ''[[yozD]]'' | ||
| + | * ''[[yozE]]'' | ||
| + | * ''[[yozF]]'' | ||
| + | * ''[[yozN]]'' | ||
| + | * ''[[yozP]]'' | ||
| + | * ''[[ypeP]]'' | ||
| + | * ''[[ypeQ]]'' | ||
| + | * ''[[yppC]]'' | ||
| + | * ''[[yppD]]'' | ||
| + | * ''[[ypqP]]'' | ||
| + | * ''[[yptA]]'' | ||
| + | * ''[[ypuI]]'' | ||
| + | * ''[[yqcI]]'' | ||
| + | * ''[[ypzC]]'' | ||
| + | * ''[[yqaN]]'' | ||
| + | * ''[[yqaO]]'' | ||
| + | * ''[[yqeC]]'' | ||
| + | * ''[[yqgE]]'' | ||
| + | * ''[[yqgO]]'' | ||
| + | * ''[[yqhO]]'' | ||
| + | * ''[[yqhR]]'' | ||
| + | * ''[[yqhV]]'' | ||
| + | * ''[[yqjB]]'' | ||
| + | * ''[[yqjC]]'' | ||
| + | * ''[[yrbE]]'' | ||
| + | * ''[[yrbD]]'' | ||
| + | * ''[[yrbG]]'' | ||
| + | * ''[[yrdN]]'' | ||
| + | * ''[[yrrI]]'' | ||
| + | * ''[[yrrT]]'' | ||
| + | * ''[[yrzA]]'' | ||
| + | * ''[[yrzE]]'' | ||
| + | * ''[[yrzF]]'' | ||
| + | * ''[[yrzI]]'' | ||
| + | * ''[[yrzK]]'' | ||
| + | * ''[[ysnE]]'' | ||
| + | * ''[[ytaG]]'' | ||
| + | * ''[[ytcA]]'' | ||
| + | * ''[[ytcB]]'' | ||
| + | * ''[[ytdA]]'' | ||
| + | * ''[[yteT]]'' | ||
| + | * ''[[ythA]]'' | ||
| + | * ''[[ythB]]'' | ||
| + | * ''[[ytvB]]'' | ||
| + | * ''[[ytwI]]'' | ||
| + | * ''[[ytzC]]'' | ||
| + | * ''[[ytzH]]'' | ||
| + | * ''[[yubC]]'' | ||
| + | * ''[[yueG]]'' | ||
| + | * ''[[yufS]]'' | ||
| + | * ''[[yugF]]'' | ||
| + | * ''[[yugO]]'' | ||
| + | * ''[[yugS]]'' | ||
| + | * ''[[yugT]]'' | ||
| + | * ''[[yumB]]'' | ||
| + | * ''[[yunC]]'' | ||
| + | * ''[[yurZ]]'' | ||
| + | * ''[[yusW]]'' | ||
| + | * ''[[yutC]]'' | ||
| + | * ''[[yutG]]'' | ||
| + | * ''[[yuzE]]'' | ||
| + | * ''[[yuzF]]'' | ||
| + | * ''[[yvaC]]'' | ||
| + | * ''[[yvaG]]'' | ||
| + | * ''[[yvaK]]'' | ||
| + | * ''[[yvaM]]'' | ||
| + | * ''[[yvdA]]'' | ||
| + | * ''[[yvnB]]'' | ||
| + | * ''[[ywaF]]'' | ||
| + | * ''[[ywbB]]'' | ||
| + | * ''[[ywkF]]'' | ||
| + | * ''[[ywbA]]'' | ||
| + | * ''[[ywcI]]'' | ||
| + | * ''[[ywhK]]'' | ||
| + | * ''[[ywhL]]'' | ||
| + | * ''[[ywmA]]'' | ||
| + | * ''[[ywnG]]'' | ||
| + | * ''[[ywoC]]'' | ||
| + | * ''[[ywoD]]'' | ||
| + | * ''[[ywqH]]'' | ||
| + | * ''[[ywqI]]'' | ||
| + | * ''[[ywqK]]'' | ||
| + | * ''[[ywqL]]'' | ||
| + | * ''[[ywrK]]'' | ||
| + | * ''[[yxbA]]'' | ||
| + | * ''[[yyaL]]'' | ||
| + | * ''[[yybP]]'' | ||
| + | * ''[[yycE]]'' | ||
| + | * ''[[yycN]]'' | ||
| + | * ''[[yycO]]'' | ||
| + | * ''[[yycP]]'' | ||
| + | * ''[[yycQ]]'' | ||
| + | * ''[[yyzB]]'' | ||
| + | |||
| + | ==Important reviews== | ||
| + | <pubmed>22091839 20833318 16045607 15819616 15659154 15556029 15187183 15035041 2257467 22882546 24983526 25646759 27364121 27148245 27501460 | ||
| + | </pubmed> | ||
==Important original publications== | ==Important original publications== | ||
| − | <pubmed>21667307 21665972 21905219 </pubmed> | + | <pubmed>21667307 21665972 21905219 23284278 25341802 25356555 25548246 26735940 29425492 </pubmed> |
| + | |||
| + | == Important web site: [http://sporeweb.molgenrug.nl/ SporeWeb] == | ||
| + | * [http://sporeweb.molgenrug.nl/ SporeWeb] is a dynamic web-based platform describing all stages of [[sporulation]] in ''B. subtilis'' from a gene regulatory point of view. The website is intended for all microbial researches interested in bacterial [[sporulation]] and/or gene regulatory networks and contains useful information for both [[sporulation]] experts and non-experts. | ||
| + | * You can find: | ||
| + | ** detailed review-like descriptions of all [[sporulation]] stages, | ||
| + | ** schematic representations of regulatory events during every stage, | ||
| + | ** links to specific regulators and their [[regulons]], | ||
| + | ** access to detailed Excel sheets of all sporulation-specific [[regulons]], | ||
| + | ** Cytoscape-generated layouts of regulon interactions during a specific stage, | ||
| + | ** a tool to generate your own Cytoscape interaction figure for specific genes of interest, | ||
| + | ** heat maps showing expression values of all [[sporulation]] genes during the sporulation cycle (derived from [http://www.ncbi.nlm.nih.gov/pubmed/22383849 Nicolas ''et al''., 2012]), | ||
| + | ** direct links to other knowledge platforms, such as ''Subti''Wiki, | ||
| + | ** an extensive list of references for further detailed information. | ||
| + | * The website is self explanatory, but you can also take a quick look at [http://youtu.be/XSTpU80o4t0 the short introduction video]. | ||
| + | * Importantly, the website is database driven: it can (and will) be updated as new exciting insights become available in literature. | ||
| + | <pubmed>24170806</pubmed> | ||
=Back to [[categories]]= | =Back to [[categories]]= | ||
Latest revision as of 19:25, 11 February 2018
| Parent categories | |
| Neighbouring categories |
|
| Related categories | |
Contents
- 1 Genes in this functional category
- 2 Important reviews
- 3 Important original publications
- 4 Important web site: SporeWeb
- 5 Back to categories
Genes in this functional category
Spore coat proteins
Class I
- these proteins completly cover the membrane around the forespore
- early localizing spore coat proteins
Class II
- these proteins localize simultaneously with the class I proteins but begin to encase the spore only after engulfment is complete
- early localizing spore coat proteins
Class III
- these proteins localize simultaneously with the class I and class II proteins but start to encase the spore only after the appearance of phase dark spores (hr 4.5)
- early localizing spore coat proteins
Class IV
- late localizing spore coat proteins (only after completion of engulfment)
- intermediate between classes III and V
Class V
- late localizing spore coat proteins (only after completion of engulfment)
- localize exclusively to phase dark spores
- localize simultaneously to both poles of the spore
Class VI
- late localizing spore coat proteins (only after completion of engulfment)
- most delayed initial localization
- localize excluseively to phase bright spores
not yet assigned
- cgeA
- cgeB
- cgeC
- cgeD
- cgeE
- cmpA
- cotC
- cotF
- cotH
- cotI
- cotJA
- cotJB
- cotJC
- cotR
- cotSA
- cotV
- cotX
- cotY
- gerQ
- gerR
- gerT
- ldt
- safA
- spsB
- yabG
- ygaK
- ydhD
- yhbB
- yheC
- yisJ
- yjdH
- ykvP
- yobN
- yodI
- ypeP
- yqfT
- ywqH
Important publications on the spore coat
Spore coat protein/ based on similarity
Small acid-soluble spore proteins
Non-homologous end joining DNA repair
Utilization of specific carbon sources
Sporulation proteins/ other
- coxA
- csbX
- csfB
- ctaA
- ctpB
- cwlC
- cwlD
- cwlH
- dacB
- dacF
- dapA
- dapG
- divIB
- divIC
- exoA
- exuR
- exuT
- fabL
- fin
- fisB
- ftsY
- seaA
- sigF
- sigG
- sodF
- splA
- splB
- spmA
- spmB
- spoIIAA
- spoIIAB
- spoIID
- spoIIIAA
- spoIIIAB
- spoIIIAC
- spoIIIAD
- spoIIIAE
- spoIIIAF
- spoIIIAG
- spoIIIAH
- spoIIIC
- spoIIID
- spoIIIL
- spoIIM
- spoIIP
- spoIIQ
- spoIIT
- spoIIR
- spoIISA
- spoIVA
- spoIVB
- spoIVCA
- spoIVCB
- spoIVFA
- spoIVFB
- spoVAA
- spoVAB
- spoVAC
- spoVAF
- spoVB
- spoVD
- spoVE
- spoVFA
- spoVFB
Newly identified sporulation proteins (based on transcription profiling)
- abnA
- acdA
- acoA
- acoB
- acoC
- acoL
- acoR
- alkA
- amiE
- amyC
- amyD
- amyX
- araL
- araM
- bglS
- bmrC
- bmrD
- bpsA
- bpsB
- citA
- citH
- comER
- cypA
- degQ
- dtpT
- fadA
- fadF
- fadM
- fadN
- ggt
- hemZ
- ispA
- kapD
- kbl
- licA
- licB
- licC
- licH
- lplD
- mciZ
- mdxE
- mdxF
- mdxG
- melA
- msmE
- mstX
- murP
- murQ
- murR
- nrnB
- nagZ
- pgcM
- pucH
- racA
- tdh
- sigE
- spoIIE
- spoVC
- ugd
- xpaC
- yaaC
- yabS
- ybbC
- ybeF
- ybfJ
- ycgI
- ycgH
- ycgL
- yclG
- yczM
- ydzH
- ydzR
- yerA
- yetF
- yezF
- ygzA
- ygzC
- yfhM
- yfhS
- yflJ
- yflN
- yfmA
- yhaR
- yheA
- yhcT
- yhcW
- yhdB
- yhdC
- yhdF
- yheF
- yhfA
- yhfN
- yhjQ
- yhzD
- yhzF
- yisN
- yitE
- yitQ
- yizC
- yizD
- yjaU
- yjaZ
- yjbE
- yjnA
- yjqC
- yjzC
- yjzK
- ykjA
- ykoN
- ykoP
- ykoQ
- ykoS
- ykoT
- ykoY
- ykpC
- ykuS
- ykwB
- ykzD
- ykzE
- ykzH
- ylaK
- yloB
- ylxY
- ymaF
- ymfD
- ymfH
- ymfI
- ymfJ
- yndM
- ynfE
- yngK
- yngL
- ynzE
- yoaI
- yoaM
- yoaQ
- yoaU
- yocN
- yodU
- yodL
- yodN
- yojB
- yoqH
- yosA
- yozD
- yozE
- yozF
- yozN
- yozP
- ypeP
- ypeQ
- yppC
- yppD
- ypqP
- yptA
- ypuI
- yqcI
- ypzC
- yqaN
- yqaO
- yqeC
- yqgE
- yqgO
- yqhO
- yqhR
- yqhV
- yqjB
- yqjC
- yrbE
- yrbD
- yrbG
- yrdN
- yrrI
- yrrT
- yrzA
- yrzE
- yrzF
- yrzI
- yrzK
- ysnE
- ytaG
- ytcA
- ytcB
- ytdA
- yteT
- ythA
- ythB
- ytvB
- ytwI
- ytzC
- ytzH
- yubC
- yueG
- yufS
- yugF
- yugO
- yugS
- yugT
- yumB
- yunC
- yurZ
- yusW
- yutC
- yutG
- yuzE
- yuzF
- yvaC
- yvaG
- yvaK
- yvaM
- yvdA
- yvnB
- ywaF
- ywbB
- ywkF
- ywbA
- ywcI
- ywhK
- ywhL
- ywmA
- ywnG
- ywoC
- ywoD
- ywqH
- ywqI
- ywqK
- ywqL
- ywrK
- yxbA
- yyaL
- yybP
- yycE
- yycN
- yycO
- yycP
- yycQ
- yyzB
Important reviews
Jatin Narula, Masaya Fujita, Oleg A Igoshin
Functional requirements of cellular differentiation: lessons from Bacillus subtilis.
Curr Opin Microbiol: 2016, 34;38-46
[PubMed:27501460]
[WorldCat.org]
[DOI]
(I p)
Jelle Slager, Jan-Willem Veening
Hard-Wired Control of Bacterial Processes by Chromosomal Gene Location.
Trends Microbiol: 2016, 24(10);788-800
[PubMed:27364121]
[WorldCat.org]
[DOI]
(I p)
Frédérique Pompeo, Elodie Foulquier, Anne Galinier
Impact of Serine/Threonine Protein Kinases on the Regulation of Sporulation in Bacillus subtilis.
Front Microbiol: 2016, 7;568
[PubMed:27148245]
[WorldCat.org]
[DOI]
(P e)
Kelly A Fimlaid, Aimee Shen
Diverse mechanisms regulate sporulation sigma factor activity in the Firmicutes.
Curr Opin Microbiol: 2015, 24;88-95
[PubMed:25646759]
[WorldCat.org]
[DOI]
(I p)
Irene S Tan, Kumaran S Ramamurthi
Spore formation in Bacillus subtilis.
Environ Microbiol Rep: 2014, 6(3);212-25
[PubMed:24983526]
[WorldCat.org]
[DOI]
(I p)
Michael Y Galperin, Sergei L Mekhedov, Pere Puigbo, Sergey Smirnov, Yuri I Wolf, Daniel J Rigden
Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes.
Environ Microbiol: 2012, 14(11);2870-90
[PubMed:22882546]
[WorldCat.org]
[DOI]
(I p)
Douglas Higgins, Jonathan Dworkin
Recent progress in Bacillus subtilis sporulation.
FEMS Microbiol Rev: 2012, 36(1);131-48
[PubMed:22091839]
[WorldCat.org]
[DOI]
(I p)
Michiel J L de Hoon, Patrick Eichenberger, Dennis Vitkup
Hierarchical evolution of the bacterial sporulation network.
Curr Biol: 2010, 20(17);R735-45
[PubMed:20833318]
[WorldCat.org]
[DOI]
(I p)
Imrich Barák, Anthony J Wilkinson
Where asymmetry in gene expression originates.
Mol Microbiol: 2005, 57(3);611-20
[PubMed:16045607]
[WorldCat.org]
[DOI]
(P p)
Michael D Yudkin, Joanna Clarkson
Differential gene expression in genetically identical sister cells: the initiation of sporulation in Bacillus subtilis.
Mol Microbiol: 2005, 56(3);578-89
[PubMed:15819616]
[WorldCat.org]
[DOI]
(P p)
Imrich Barák, Ezio Ricca, Simon M Cutting
From fundamental studies of sporulation to applied spore research.
Mol Microbiol: 2005, 55(2);330-8
[PubMed:15659154]
[WorldCat.org]
[DOI]
(P p)
Patrick J Piggot, David W Hilbert
Sporulation of Bacillus subtilis.
Curr Opin Microbiol: 2004, 7(6);579-86
[PubMed:15556029]
[WorldCat.org]
[DOI]
(P p)
David W Hilbert, Patrick J Piggot
Compartmentalization of gene expression during Bacillus subtilis spore formation.
Microbiol Mol Biol Rev: 2004, 68(2);234-62
[PubMed:15187183]
[WorldCat.org]
[DOI]
(P p)
Jeff Errington
Regulation of endospore formation in Bacillus subtilis.
Nat Rev Microbiol: 2003, 1(2);117-26
[PubMed:15035041]
[WorldCat.org]
[DOI]
(P p)
R R Freedman
Raynaud's phenomenon, lack of neurological influence.
Br J Rheumatol: 1990, 29(6);492-3
[PubMed:2257467]
[WorldCat.org]
[DOI]
(P p)
Important original publications
Javier Lopez-Garrido, Nikola Ojkic, Kanika Khanna, Felix R Wagner, Elizabeth Villa, Robert G Endres, Kit Pogliano
Chromosome Translocation Inflates Bacillus Forespores and Impacts Cellular Morphology.
Cell: 2018, 172(4);758-770.e14
[PubMed:29425492]
[WorldCat.org]
[DOI]
(I p)
Alexander J Meeske, Christopher D A Rodrigues, Jacqueline Brady, Hoong Chuin Lim, Thomas G Bernhardt, David Z Rudner
High-Throughput Genetic Screens Identify a Large and Diverse Collection of New Sporulation Genes in Bacillus subtilis.
PLoS Biol: 2016, 14(1);e1002341
[PubMed:26735940]
[WorldCat.org]
[DOI]
(I e)
Sonali Ghosh, George Korza, Mark Maciejewski, Peter Setlow
Analysis of metabolism in dormant spores of Bacillus species by 31P nuclear magnetic resonance analysis of low-molecular-weight compounds.
J Bacteriol: 2015, 197(5);992-1001
[PubMed:25548246]
[WorldCat.org]
[DOI]
(I p)
Nikola Ojkic, Javier López-Garrido, Kit Pogliano, Robert G Endres
Bistable forespore engulfment in Bacillus subtilis by a zipper mechanism in absence of the cell wall.
PLoS Comput Biol: 2014, 10(10);e1003912
[PubMed:25356555]
[WorldCat.org]
[DOI]
(I e)
Adaoha E C Ihekwaba, Ivan Mura, Gary C Barker
Computational modelling and analysis of the molecular network regulating sporulation initiation in Bacillus subtilis.
BMC Syst Biol: 2014, 8;119
[PubMed:25341802]
[WorldCat.org]
[DOI]
(I e)
Jordi van Gestel, Martin A Nowak, Corina E Tarnita
The evolution of cell-to-cell communication in a sporulating bacterium.
PLoS Comput Biol: 2012, 8(12);e1002818
[PubMed:23284278]
[WorldCat.org]
[DOI]
(I p)
Wishwas Abhyankar, Alex Ter Beek, Henk Dekker, Remco Kort, Stanley Brul, Chris G de Koster
Gel-free proteomic identification of the Bacillus subtilis insoluble spore coat protein fraction.
Proteomics: 2011, 11(23);4541-50
[PubMed:21905219]
[WorldCat.org]
[DOI]
(I p)
Langyong Mao, Shantong Jiang, Bin Wang, Liang Chen, Qin Yao, Keping Chen
Protein profile of Bacillus subtilis spore.
Curr Microbiol: 2011, 63(2);198-205
[PubMed:21667307]
[WorldCat.org]
[DOI]
(I p)
Daisuke Imamura, Ritsuko Kuwana, Hiromu Takamatsu, Kazuhito Watabe
Proteins involved in formation of the outermost layer of Bacillus subtilis spores.
J Bacteriol: 2011, 193(16);4075-80
[PubMed:21665972]
[WorldCat.org]
[DOI]
(I p)
Important web site: SporeWeb
- SporeWeb is a dynamic web-based platform describing all stages of sporulation in B. subtilis from a gene regulatory point of view. The website is intended for all microbial researches interested in bacterial sporulation and/or gene regulatory networks and contains useful information for both sporulation experts and non-experts.
- You can find:
- detailed review-like descriptions of all sporulation stages,
- schematic representations of regulatory events during every stage,
- links to specific regulators and their regulons,
- access to detailed Excel sheets of all sporulation-specific regulons,
- Cytoscape-generated layouts of regulon interactions during a specific stage,
- a tool to generate your own Cytoscape interaction figure for specific genes of interest,
- heat maps showing expression values of all sporulation genes during the sporulation cycle (derived from Nicolas et al., 2012),
- direct links to other knowledge platforms, such as SubtiWiki,
- an extensive list of references for further detailed information.
- The website is self explanatory, but you can also take a quick look at the short introduction video.
- Importantly, the website is database driven: it can (and will) be updated as new exciting insights become available in literature.
Robyn T Eijlander, Anne de Jong, Antonina O Krawczyk, Siger Holsappel, Oscar P Kuipers
SporeWeb: an interactive journey through the complete sporulation cycle of Bacillus subtilis.
Nucleic Acids Res: 2014, 42(Database issue);D685-91
[PubMed:24170806]
[WorldCat.org]
[DOI]
(I p)
