Sporulation
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Contents
- 1 Genes in this functional category
- 2 Important reviews
- 3 Important original publications
- 4 Important web site: SporeWeb
- 5 Back to categories
Genes in this functional category
Spore coat proteins
Class I
- these proteins completly cover the membrane around the forespore
- early localizing spore coat proteins
Class II
- these proteins localize simultaneously with the class I proteins but begin to encase the spore only after engulfment is complete
- early localizing spore coat proteins
Class III
- these proteins localize simultaneously with the class I and class II proteins but start to encase the spore only after the appearance of phase dark spores (hr 4.5)
- early localizing spore coat proteins
Class IV
- late localizing spore coat proteins (only after completion of engulfment)
- intermediate between classes III and V
Class V
- late localizing spore coat proteins (only after completion of engulfment)
- localize exclusively to phase dark spores
- localize simultaneously to both poles of the spore
Class VI
- late localizing spore coat proteins (only after completion of engulfment)
- most delayed initial localization
- localize excluseively to phase bright spores
not yet assigned
- cgeA
- cgeB
- cgeC
- cgeD
- cgeE
- cmpA
- cotC
- cotF
- cotH
- cotI
- cotJA
- cotJB
- cotJC
- cotR
- cotSA
- cotV
- cotX
- cotY
- gerQ
- gerR
- gerT
- ldt
- safA
- yabG
- ygaK
- ydhD
- yhbB
- yheC
- yisJ
- yjdH
- ykvP
- yobN
- yodI
- ypeP
- yqfT
- ywqH
Important publications on the spore coat
Spore coat protein/ based on similarity
Small acid-soluble spore proteins
Non-homologous end joining DNA repair
Sporulation proteins/ other
- abnA
- acdA
- acoA
- acoB
- acoC
- acoL
- acoR
- adhB
- alkA
- amiE
- amyC
- amyD
- amyX
- asd
- asnO
- azoR2
- bdbC
- bdbD
- bglS
- bmrC
- bmrD
- bofA
- bofC
- bpsA
- bpsB
- ccpB
- cdaS
- chaA
- clpC
- comER
- coxA
- csbX
- ctaA
- ctpB
- cwlC
- cwlD
- cwlH
- cypA
- dacB
- dacF
- dapA
- dapG
- degQ
- divIB
- divIC
- exoA
- exuR
- exuT
- fabL
- fadA
- fadF
- fadM
- fadN
- fin
- fisB
- ftsY
- ggt
- gin
- glcU
- glgA
- glgB
- glgC
- glgD
- glgP
- glnH
- glnM
- glnP
- glnQ
- hemZ
- htrC
- ispA
- ispG
- kamA
- kapD
- katX
- kbl
- ksgA
- licA
- licB
- licC
- licH
- lonB
- lysA
- lytH
- mbl
- mcsA
- mcsB
- melA
- mmgA
- mmgB
- mmgC
- mmgD
- mmgE
- msmE
- murB
- murG
- murP
- murQ
- murR
- mutTA
- nagZ
- nfo
- nrnB
- pbpF
- pbpG
- pbpI
- pdaA
- pdaB
- pgcM
- phoB
- phoP
- phoR
- prkA
- pucH
- racA
- remA
- rsfA
- sbp
- scoA
- scoB
- seaA
- sigE
- sigF
- sigG
- sodF
- splA
- splB
- spmA
- spmB
- spoIIAA
- spoIIAB
- spoIID
- spoIIE
- spoIIM
- spoIIP
- spoIIQ
- spoIIR
- spoIISA
- spoIIIAA
- spoIIIAB
- spoIIIAC
- spoIIIAD
- spoIIIAE
- spoIIIAF
- spoIIIAG
- spoIIIAH
- spoIIIC
- spoIIID
- spoIVA
- spoIVB
- spoIVCA
- spoIVCB
- spoIVFA
- spoIVFB
- spoVAA
- spoVAB
- spoVAC
- spoVAF
- spoVB
- spoVC
- spoVD
- spoVE
- spoVFA
- spoVFB
- spoVIF
- spoVK
- spoVR
- spoVT
- spsA
- spsB
- spsC
- spsD
- spsE
- spsF
- spsG
- spsI
- spsJ
- spsK
- spsL
- sqhC
- sscA
- stoA
- tdh
- tlp
- tuaF
- tuaG
- tuaH
- ugd
- usd
- uxaA
- uxaB
- uxuA
- yabP
- yabQ
- yabR
- yabT
- ybaK
- ybxH
- ycgF
- ycgG
- yckC
- yckD
- yclF
- yclG
- yczM
- ydcA
- ydcC
- ydfR
- ydfS
- ydgA
- ydgB
- ydhF
- ydjP
- ydzH
- ydzR
- yeaA
- yesJ
- yesK
- yezF
- yfnD
- yfnE
- yfnF
- yfnG
- yfnH
- ygzA
- ygzC
- yhaL
- yhbH
- yhcM
- yhcN
- yhcO
- yhcQ
- yhcV
- yheA
- yhfM
- yhfW
- yhxC
- yhzD
- yhzF
- yisZ
- yizC
- yizD
- yitA
- yitB
- yitC
- yitD
- yitF
- yitG
- yjaU
- yjaV
- yjbA
- yjcA
- yjfA
- yjmC
- yjmD
- yjmF
- yjzC
- yjzK
- ykvI
- ykvQ
- ylaJ
- ylaM
- ylbB
- ylbC
- ylbE
- ylbJ
- ylmC
- yloB
- ylxW
- ylxX
- ylyA
- ymfD
- ymxH
- yndA
- yndL
- yngE
- yngF
- yngG
- yngH
- yngHB
- yngI
- yngJ
- yoaR
- yoaU
- yoaW
- yobW
- yocL
- yocN
- yodH
- yodU
- yodP
- yodQ
- yodR
- yodS
- yodT
- yokU
- yoqH
- yosA
- yotN
- yozP
- yozQ
- ypfB
- yphA
- ypjB
- ypqA
- ypqP
- ypuI
- ypzA
- yqaN
- yqaO
- yqcK
- yqfC
- yqfD
- yqfQ
- yqfU
- yqfX
- yqfZ
- yqhG
- yqhH
- yqhP
- yqhQ
- yqiQ
- yqxA
- yqzG
- yrbD
- yrkC
- yrrD
- yrrS
- yrzF
- yrzI
- ytaF
- ytaG
- ytcC
- yteA
- yteV
- ytfI
- ythA
- ythB
- ytlA
- ytlC
- ytlD
- ytrH
- ytrI
- ytvI
- ytxC
- yugS
- yugT
- yuiC
- yurS
- yusN
- yuzA
- yvdQ
- yveA
- yvnB
- ywbA
- ywcA
- ywcB
- ywcI
- ywhK
- ywhL
- ywjD
- ywjE
- ywnJ
- ywoD
- ywrJ
- yxeD
- yxjC
- yxjF
- yyaC
- yyaD
- yycE
Newly identified sporulation proteins (based on transcription profiling)
- araL
- araM
- citA
- citH
- lplD
- xpaC
- yaaC
- yabS
- ybbC
- ybeF
- ybfJ
- ycgI
- ycgH
- ycgL
- yerA
- yetF
- yfhM
- yfhS
- yflJ
- yflN
- yfmA
- ykjA
- ykoN
- ykoP
- ykoQ
- ykoS
- ykoT
- ykoY
- ykpC
- ykuS
- ykwB
- ykzD
- ykzE
- ykzH
- ylaK
- ylxY
- ymaF
- ymfH
- ymfI
- ymfJ
- yndM
- ynfE
- yngK
- yngL
- ynzE
- yoaI
- yoaM
- yoaQ
- yqgE
- yqgO
- yqhO
- yqhR
- yqhV
- yqjB
- yqjC
- yrbE
- yrbG
- yrdN
- yrrI
- yrrT
- yrzA
- yrzE
- yrzK
- ysnE
- ytcA
- ytcB
- ytdA
- yteT
- ytvB
- ytwI
- ytzC
- ytzH
- yubC
- yueG
- yufS
- yugF
- yumB
- yunC
- yurZ
- yusW
- yutC
- yutG
- yuzE
- yuzF
- yvaC
- yvaG
- yvaK
- yvaM
- yvdA
- ywaF
- ywbB
- ywkF
- ywmA
- ywnG
- ywoC
- ywqH
- ywqI
- ywqK
- ywqL
- ywrK
- yxbA
- yyaL
- yybP
- yycN
- yycO
- yycP
- yycQ
- yyzB
Important reviews
Important original publications
Important web site: SporeWeb
- SporeWeb is a dynamic web-based platform describing all stages of sporulation in B. subtilis from a gene regulatory point of view. The website is intended for all microbial researches interested in bacterial sporulation and/or gene regulatory networks and contains useful information for both sporulation experts and non-experts.
- You can find:
- detailed review-like descriptions of all sporulation stages,
- schematic representations of regulatory events during every stage,
- links to specific regulators and their regulons,
- access to detailed Excel sheets of all sporulation-specific regulons,
- Cytoscape-generated layouts of regulon interactions during a specific stage,
- a tool to generate your own Cytoscape interaction figure for specific genes of interest,
- heat maps showing expression values of all sporulation genes during the sporulation cycle (derived from Nicolas et al., 2012),
- direct links to other knowledge platforms, such as SubtiWiki,
- an extensive list of references for further detailed information.
- The website is self explanatory, but you can also take a quick look at the short introduction video.
- Importantly, the website is database driven: it can (and will) be updated as new exciting insights become available in literature.