Difference between revisions of "Transcription factors and their control"
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* [[transcription factors of the MarR/DUF24 family]] | * [[transcription factors of the MarR/DUF24 family]] | ||
* [[transcription factors of the MerR family]] | * [[transcription factors of the MerR family]] | ||
| + | * [[transcription factors of the MocR/ GabR family]] | ||
* [[transcription factors of the PucR family]] | * [[transcription factors of the PucR family]] | ||
* [[transcription factors of the TetR family]] | * [[transcription factors of the TetR family]] | ||
Revision as of 16:27, 21 November 2013
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Contents
- 1 DNA-binding transcription factors
- 2 RNA-binding transcription factors
- 3 Transcription factors according to signal perception
- 4 Reviews on transcription regulation
- 4.1 Genes in this functional category
- 4.1.1 Two-component system response regulators
- 4.1.2 Control of two-component response regulators
- 4.1.3 PRD-type regulators
- 4.1.4 Control of PRD-type regulators
- 4.1.5 Transcription factors/ other
- 4.1.6 Transcription factor/ other/ based on similarity
- 4.1.7 Control of transcription factor (other than two-component system)
- 4.1 Genes in this functional category
- 5 Back to categories
Transcription factors control gene expression by regulating transcription initiation or transcription elongation. Transcription initiation is regulated by DNA-binding proteins, whereas transcription elongation can be controlled by DNA-binding proteins ("transcriptional roadblocks") or RNA-binding proteins (transcription termination/ antitermination).
Transcription factors can be grouped according to their mode of interaction with nucleic acids (DNA-or RNA-binding proteins) and also according to the mechanism by which they perceive the signal.
DNA-binding transcription factors
- transcription factors activating transcription at SigL-dependent promoters
- transcription factors of the DeoR family
- transcription factors of the Fur family
- transcription factors of the GntR family
- transcription factors of the LacI family
- transcription factors of the Lrp family
- transcription factors of the LysR family
- transcription factors of the MarR/DUF24 family
- transcription factors of the MerR family
- transcription factors of the MocR/ GabR family
- transcription factors of the PucR family
- transcription factors of the TetR family
RNA-binding transcription factors
Transcription factors according to signal perception
- PRD-containing transcription factors
- transcription factors modulated by trigger enzymes
- two-component systems
Reviews on transcription regulation
Genes in this functional category
Two-component system response regulators
- bceR
- cheY
- citT
- comA
- cssR
- dctR
- degU
- desR
- glnL
- liaR
- lytT
- malR
- natR
- phoP
- psdR
- resD
- spo0A
- walR
- ybdJ
- ycbL
- yclJ
- ydfI
- yesN
- yfiK
- yhcZ
- ykoG
- yneI
- yrkP
- yvfU
- yvrHb
- yxdJ
- yxjL
Control of two-component response regulators
Two-component sensor kinase
- bceS
- cheA
- citS
- comP
- cssS
- dctS
- degS
- desK
- glnK
- kinA
- kinB
- kinC
- kinD
- kinE
- liaS
- lytS
- malK
- natK
- phoR
- psdS
- resE
- walK
- ybdK
- ycbM
- yclK
- ydfH
- yesM
- yfiJ
- yhcY
- ykoH
- yrkQ
- yvfT
- yvrG
- ywpD
- yxdK
- yxjM
Response regulator aspartate phosphatase
Control of response regulators/ other
PRD-type regulators
Control of PRD-type regulators
Transcription factors/ other
- acoR
- adaA
- adeR
- adhR
- ahrC
- alaR
- alsR
- ansR
- araR
- arfM
- arsR
- aseR
- azlB
- birA
- bkdR
- bltR
- bmrR
- bsdA
- btr
- catR
- ccpA
- ccpB
- ccpC
- ccpN
- cggR
- chrS
- citR
- codY
- comK
- csoR
- ctsR
- cueR
- cysL
- cymR
- czrA
- degA
- deoR
- exuR
- fadR
- fapR
- fatR
- fnr
- frlR
- fruR
- fur
- gabR
- gbsR
- gerE
- gerR
- glcR
- glnR
- glpP
- gltC
- gltR
- glvR
- gmuR
- gntR
- gutR
- hrcA
- hutP
- hxlR
- hypR
- immR
- iolR
- kdgR
- kipR
- lacR
- lexA
- lmrA
- lrpA
- lrpB
- lutR
- mdtR
- mgsR
- mhqR
- mntR
- msmR
- mta
- mtrB
- murR
- nadR
- nagR
- nsrR
- ntdR
- ohrR
- opcR
- padR
- paiB
- perR
- pksA
- pucR
- purR
- putR
- pyrR
- qdoR
- rbsR
- remA
- rex
- rghR
- rocR
- rok
- scoC
- sdpR
- senS
- sinR
- sknR
- slrR
- splA
- spoIIID
- spoVT
- spx
- TilS-HprT
- tnrA
- treR
- xre
- xylR
- ybgA
- ycbG
- ycnK
- yesS
- yetL
- yfmP
- ykrK
- yodB
- yofA
- yplP
- ytlI
- ytrA
- ywcC
- zur
Transcription factor/ other/ based on similarity
- ybfI
- ybfP
- ybzH
- yceK
- ycgE
- ycgK
- ycnC
- ycxD
- yczG
- ydeB
- ydeC
- ydeE
- ydeF
- ydeL
- ydeP
- ydeS
- ydfD
- ydfL
- ydgG
- ydgJ
- ydhC
- yerO
- yezC
- yezE
- yfiF
- yfiR
- yfiV
- ygzD
- yhbI
- yhcB
- yhcF
- yhdI
- yhgD
- yisR
- yisV
- ykoM
- ykvN
- ykvZ
- ymfC
- yoaU
- yobD
- yobQ
- yonR
- yozG
- ypoP
- yraN
- yrdQ
- ysmB
- ytcD
- ytdP
- ytzE
- yulB
- yusT
- yvaO
- yvaV
- yvbU
- yvcL
- yvdE
- yvdT
- yvkB
- ywaE
- ywbI
- ywhA
- ywoH
- ywqM
