Difference between revisions of "AbrB regulon"
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| − | = Genes in this regulon = | + | = Genes in this [[regulon]] = |
=== Activation === | === Activation === | ||
| − | * ''[[ | + | * ''[[amyE]]'' |
| − | * ''[[ | + | * ''[[glpD]]'' |
| − | * ''[[ | + | * ''[[glpF]]'' |
| − | * ''[[ | + | * ''[[glpK]]'' |
| − | * ''[[ | + | * ''[[gmuA]]'' |
| − | * ''[[ | + | * ''[[gmuB]]'' |
| + | * ''[[gmuC]]'' | ||
| + | * ''[[gmuD]]'' | ||
| + | * ''[[gmuE]]'' | ||
| + | * ''[[gmuF]]'' | ||
| + | * ''[[gmuG]]'' | ||
| + | * ''[[gmuR]]'' | ||
| + | * ''[[gntK]]'' | ||
| + | * ''[[gntP]]'' | ||
| + | * ''[[gntR]]'' | ||
| + | * ''[[gntZ]]'' | ||
* ''[[rbsA]]'' | * ''[[rbsA]]'' | ||
* ''[[rbsB]]'' | * ''[[rbsB]]'' | ||
| Line 22: | Line 32: | ||
=== Repression === | === Repression === | ||
* ''[[abrB]]'' | * ''[[abrB]]'' | ||
| − | * ''[[ | + | * ''[[ahpA]]-[[ahpT]]'' |
| − | + | * ''[[antE]]'' | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | * ''[[ | ||
* ''[[aprE]]'' | * ''[[aprE]]'' | ||
* ''[[asnH]]'' | * ''[[asnH]]'' | ||
| Line 37: | Line 42: | ||
* ''[[bacE]]'' | * ''[[bacE]]'' | ||
* ''[[bacF]]'' | * ''[[bacF]]'' | ||
| + | * ''[[bdbB]]'' | ||
| + | * ''[[bdhA]]'' | ||
| + | * ''[[besA]]'' | ||
| + | * ''[[bmrB]]-[[bmrC]]-[[bmrD]]'' | ||
| + | * ''[[bslA]]'' | ||
| + | * ''[[cccA]]'' | ||
* ''[[comK]]'' | * ''[[comK]]'' | ||
| − | * ''[[ | + | * ''[[csn]]'' |
| − | * ''[[ | + | * ''[[ctaC]]'' |
| − | * ''[[ | + | * ''[[ctaD]]'' |
| − | * ''[[ | + | * ''[[ctaE]]'' |
| − | * ''[[ | + | * ''[[ctaF]]'' |
| − | * ''[[ | + | * ''[[ctaG]]'' |
| − | * ''[[ | + | * ''[[ctaO]]'' |
| − | * ''[[ | + | * ''[[cwlS]]'' |
| − | * ''[[ | + | * ''[[cypX]]'' |
| − | * ''[[ | + | * ''[[dacF]]'' |
| − | * ''[[ | + | * ''[[dhbA]]-[[dhbC]]-[[dhbE]]-[[dhbB]]-[[dhbF]]'' |
| − | * ''[[ | + | * ''[[epsA]]-[[epsB]]-[[epsC]]-[[epsD]]-[[epsE]]-[[epsF]]-[[epsG]]-[[epsH]]-[[epsI]]-[[epsJ]]-[[epsK]]-[[epsL]]-[[epsM]]-[[epsN]]-[[epsO]]'' |
| − | |||
| − | |||
| − | |||
* ''[[lip]]'' | * ''[[lip]]'' | ||
| − | * ''[[ | + | * ''[[nprE]]'' |
| + | * ''[[ntdR]]'' | ||
| + | * ''[[pbpH]]'' | ||
| + | * ''[[phrE]]'' | ||
| + | * ''[[phrK]]'' | ||
| + | * ''[[phy]]'' | ||
| + | * ''[[pksC]]-[[pksD]]-[[pksE]]-[[acpK]]-[[pksF]]-[[pksG]]-[[pksH]]-[[pksI]]-[[pksJ]]-[[pksL]]-[[pksM]]-[[pksN]]-[[pksR]]'' | ||
* ''[[pnbA]]'' | * ''[[pnbA]]'' | ||
| + | * ''[[ppsA]]'' | ||
| + | * ''[[ppsB]]'' | ||
| + | * ''[[ppsC]]'' | ||
| + | * ''[[ppsD]]'' | ||
| + | * ''[[ppsE]]'' | ||
* ''[[pspA]]'' | * ''[[pspA]]'' | ||
| − | * ''[[ | + | * ''[[qcrA]]'' |
| + | * ''[[qcrB]]'' | ||
| + | * ''[[qcrC]]'' | ||
| + | * ''[[rapH]]'' | ||
| + | * ''[[rapK]]'' | ||
| + | * ''[[rocA]]'' | ||
| + | * ''[[rocG]]'' | ||
* ''[[rok]]'' | * ''[[rok]]'' | ||
* ''[[rsiW]]'' | * ''[[rsiW]]'' | ||
| − | * ''[[sboA]] | + | * ''[[sboA]]-[[sboX]]-[[albA]]-[[albB]]-[[albC]]-[[albD]]-[[albE]]-[[albF]]-[[albG]]'' |
| − | + | * ''[[sdpA]]-[[sdpB]]-[[sdpC]]'' | |
| − | * ''[[sdpA]] | ||
| − | |||
| − | |||
* ''[[sdpI]]'' | * ''[[sdpI]]'' | ||
* ''[[sdpR]]'' | * ''[[sdpR]]'' | ||
| + | * ''[[sigF]]'' | ||
| + | * ''[[sigG]]'' | ||
* ''[[sigH]]'' | * ''[[sigH]]'' | ||
* ''[[sigW]]'' | * ''[[sigW]]'' | ||
* ''[[sinI]]'' | * ''[[sinI]]'' | ||
* ''[[sinR]]'' | * ''[[sinR]]'' | ||
| − | * ''[[ | + | * ''[[sivA]]'' |
| + | * ''[[sivC]]'' | ||
* ''[[skfA]]'' | * ''[[skfA]]'' | ||
* ''[[skfB]]'' | * ''[[skfB]]'' | ||
| Line 79: | Line 104: | ||
* ''[[skfG]]'' | * ''[[skfG]]'' | ||
* ''[[skfH]]'' | * ''[[skfH]]'' | ||
| + | * ''[[slrR]]'' | ||
* ''[[spo0E]]'' | * ''[[spo0E]]'' | ||
| + | * ''[[spoIIAA]]'' | ||
| + | * ''[[spoIIAB]]'' | ||
* ''[[spoVG]]'' | * ''[[spoVG]]'' | ||
* ''[[sunA]]'' | * ''[[sunA]]'' | ||
| − | * ''[[tasA]]'' | + | * ''[[sunT]]-[[bdbA]]-[[sunS]]'' |
| + | * ''[[tapA]]-[[sipW]]-[[tasA]]'' | ||
| + | * ''[[tkmA]]-[[ptkA]]-[[ptpZ]]-[[ugd]]'' | ||
* ''[[tlpA]]'' | * ''[[tlpA]]'' | ||
| + | * ''[[xynC]]'' | ||
| + | * ''[[xynD]]'' | ||
| + | * ''[[ybaJ]]'' | ||
* ''[[ybdN]]'' | * ''[[ybdN]]'' | ||
* ''[[ybdO]]'' | * ''[[ybdO]]'' | ||
* ''[[ybfO]]'' | * ''[[ybfO]]'' | ||
| + | * ''[[ybfP]]'' | ||
* ''[[ycbJ]]'' | * ''[[ycbJ]]'' | ||
| + | * ''[[ycdA]]'' | ||
* ''[[ycnK]]'' | * ''[[ycnK]]'' | ||
| − | * ''[[ | + | * ''[[yddJ]]'' |
| + | * ''[[yddT]]'' | ||
| + | * ''[[ydeH]]'' | ||
| + | * ''[[ydeJ]]'' | ||
* ''[[ydjG]]'' | * ''[[ydjG]]'' | ||
* ''[[ydjH]]'' | * ''[[ydjH]]'' | ||
| − | * ''[[ | + | * ''[[ydjI]]'' |
| + | * ''[[yerI]]'' | ||
| + | * ''[[yflA]]'' | ||
| + | * ''[[yflB]]'' | ||
| + | * ''[[yfmG]]'' | ||
| + | * ''[[yfmI]]'' | ||
* ''[[yhaP]]'' | * ''[[yhaP]]'' | ||
| + | * ''[[yhaQ]]'' | ||
| + | * ''[[yjcM]]'' | ||
| + | * ''[[yjdB]]'' | ||
| + | * ''[[yjdG]]'' | ||
* ''[[yknW]]'' | * ''[[yknW]]'' | ||
* ''[[yknX]]'' | * ''[[yknX]]'' | ||
* ''[[yknY]]'' | * ''[[yknY]]'' | ||
* ''[[yknZ]]'' | * ''[[yknZ]]'' | ||
| − | * ''[[ | + | * ''[[ylaE]]'' |
| + | * ''[[ylbA]]'' | ||
| + | |||
| + | * ''[[ymaE]]'' | ||
| + | * ''[[ymzB]]'' | ||
| + | * ''[[yncM]]'' | ||
| + | * ''[[ynzD]]'' | ||
* ''[[yoaW]]'' | * ''[[yoaW]]'' | ||
| + | * ''[[yobB]]'' | ||
| + | * ''[[yobO]]'' | ||
| + | * ''[[yocD]]'' | ||
* ''[[yocH]]'' | * ''[[yocH]]'' | ||
| − | * ''[[ | + | * ''[[yokI]]'' |
| − | * ''[[ | + | * ''[[yokJ]]'' |
| + | * ''[[yokK]]'' | ||
| + | * ''[[yokL]]'' | ||
| + | * ''[[yolA]]'' | ||
| + | * ''[[yolB]]'' | ||
| + | * ''[[yolC]]'' | ||
| + | * ''[[yomJ]]'' | ||
| + | * ''[[yoqM]]'' | ||
| + | * ''[[yorD]]'' | ||
| + | * ''[[yphE]]'' | ||
| + | * ''[[yphF]]'' | ||
| + | * ''[[yqaP]]'' | ||
| + | * ''[[yqcG]]'' | ||
| + | * ''[[yqxI]]'' | ||
| + | * ''[[yqxJ]]'' | ||
| + | * ''[[yqzG]]'' | ||
| + | * ''[[yrpD]]'' | ||
| + | * ''[[yrzI]]'' | ||
| + | * ''[[yscB]]'' | ||
| + | * ''[[yurI]]'' | ||
* ''[[yvcA]]'' | * ''[[yvcA]]'' | ||
* ''[[yvcB]]'' | * ''[[yvcB]]'' | ||
| − | * ''[[ | + | * ''[[yvgO]]'' |
| − | * ''[[ | + | * ''[[yvmC]]'' |
| − | * ''[[ | + | * ''[[yvnA]]'' |
| − | * ''[[ | + | * ''[[yvqJ]]'' |
| + | * ''[[yvrN]]'' | ||
| + | * ''[[yvrO]]'' | ||
| + | * ''[[yvrP]]'' | ||
* ''[[yvzA]]'' | * ''[[yvzA]]'' | ||
| + | * ''[[ywbF]]'' | ||
* ''[[ywcE]]'' | * ''[[ywcE]]'' | ||
| + | |||
* ''[[ywoF]]'' | * ''[[ywoF]]'' | ||
* ''[[yxaA]]'' | * ''[[yxaA]]'' | ||
* ''[[yxaB]]'' | * ''[[yxaB]]'' | ||
| + | * ''[[yxaJ]]'' | ||
* ''[[yxaL]]'' | * ''[[yxaL]]'' | ||
* ''[[yxaM]]'' | * ''[[yxaM]]'' | ||
| Line 120: | Line 201: | ||
* ''[[yxbC]]'' | * ''[[yxbC]]'' | ||
* ''[[yxbD]]'' | * ''[[yxbD]]'' | ||
| + | * ''[[yxeD]]'' | ||
* ''[[yxnB]]'' | * ''[[yxnB]]'' | ||
* ''[[yxzE]]'' | * ''[[yxzE]]'' | ||
| − | * ''[[yydF]] | + | * ''[[yydF]]-[[yydG]]-[[yydH]]-[[yydI]]-[[yydJ]]'' |
| − | + | ||
| − | + | = Important publications on the [[AbrB]] [[regulon]]: = | |
| − | + | <pubmed>20817675,18840696 23580539</pubmed> | |
| − | |||
| − | = | + | =Back to [[regulons]]= |
Latest revision as of 16:55, 26 February 2016
| Regulator | |
Contents
Genes in this regulon
Activation
- amyE
- glpD
- glpF
- glpK
- gmuA
- gmuB
- gmuC
- gmuD
- gmuE
- gmuF
- gmuG
- gmuR
- gntK
- gntP
- gntR
- gntZ
- rbsA
- rbsB
- rbsC
- rbsD
- rbsK
- rbsR
- scoC
Repression
- abrB
- ahpA-ahpT
- antE
- aprE
- asnH
- bacA
- bacB
- bacC
- bacD
- bacE
- bacF
- bdbB
- bdhA
- besA
- bmrB-bmrC-bmrD
- bslA
- cccA
- comK
- csn
- ctaC
- ctaD
- ctaE
- ctaF
- ctaG
- ctaO
- cwlS
- cypX
- dacF
- dhbA-dhbC-dhbE-dhbB-dhbF
- epsA-epsB-epsC-epsD-epsE-epsF-epsG-epsH-epsI-epsJ-epsK-epsL-epsM-epsN-epsO
- lip
- nprE
- ntdR
- pbpH
- phrE
- phrK
- phy
- pksC-pksD-pksE-acpK-pksF-pksG-pksH-pksI-pksJ-pksL-pksM-pksN-pksR
- pnbA
- ppsA
- ppsB
- ppsC
- ppsD
- ppsE
- pspA
- qcrA
- qcrB
- qcrC
- rapH
- rapK
- rocA
- rocG
- rok
- rsiW
- sboA-sboX-albA-albB-albC-albD-albE-albF-albG
- sdpA-sdpB-sdpC
- sdpI
- sdpR
- sigF
- sigG
- sigH
- sigW
- sinI
- sinR
- sivA
- sivC
- skfA
- skfB
- skfC
- skfE
- skfF
- skfG
- skfH
- slrR
- spo0E
- spoIIAA
- spoIIAB
- spoVG
- sunA
- sunT-bdbA-sunS
- tapA-sipW-tasA
- tkmA-ptkA-ptpZ-ugd
- tlpA
- xynC
- xynD
- ybaJ
- ybdN
- ybdO
- ybfO
- ybfP
- ycbJ
- ycdA
- ycnK
- yddJ
- yddT
- ydeH
- ydeJ
- ydjG
- ydjH
- ydjI
- yerI
- yflA
- yflB
- yfmG
- yfmI
- yhaP
- yhaQ
- yjcM
- yjdB
- yjdG
- yknW
- yknX
- yknY
- yknZ
- ylaE
- ylbA
- ymaE
- ymzB
- yncM
- ynzD
- yoaW
- yobB
- yobO
- yocD
- yocH
- yokI
- yokJ
- yokK
- yokL
- yolA
- yolB
- yolC
- yomJ
- yoqM
- yorD
- yphE
- yphF
- yqaP
- yqcG
- yqxI
- yqxJ
- yqzG
- yrpD
- yrzI
- yscB
- yurI
- yvcA
- yvcB
- yvgO
- yvmC
- yvnA
- yvqJ
- yvrN
- yvrO
- yvrP
- yvzA
- ywbF
- ywcE
Important publications on the AbrB regulon:
Onuma Chumsakul, Kensuke Nakamura, Tetsuya Kurata, Tomoaki Sakamoto, Jon L Hobman, Naotake Ogasawara, Taku Oshima, Shu Ishikawa
High-resolution mapping of in vivo genomic transcription factor binding sites using in situ DNase I footprinting and ChIP-seq.
DNA Res: 2013, 20(4);325-38
[PubMed:23580539]
[WorldCat.org]
[DOI]
(I p)
Onuma Chumsakul, Hiroki Takahashi, Taku Oshima, Takahiro Hishimoto, Shigehiko Kanaya, Naotake Ogasawara, Shu Ishikawa
Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation.
Nucleic Acids Res: 2011, 39(2);414-28
[PubMed:20817675]
[WorldCat.org]
[DOI]
(I p)
Allison V Banse, Arnaud Chastanet, Lilah Rahn-Lee, Errett C Hobbs, Richard Losick
Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis.
Proc Natl Acad Sci U S A: 2008, 105(40);15547-52
[PubMed:18840696]
[WorldCat.org]
[DOI]
(I p)
