Difference between revisions of "AbrB regulon"

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−
 
 
{{RegulonTable|
 
{{RegulonTable|
 
Regulator=[[AbrB]]
 
Regulator=[[AbrB]]
 
}}
 
}}
  
−
= Genes in this regulon =
+
= Genes in this [[regulon]] =
  
 
=== Activation ===
 
=== Activation ===
−
* ''[[citB]]''
+
* ''[[amyE]]''
−
* ''[[hutG]]''
+
* ''[[glpD]]''
−
* ''[[hutH]]''
+
* ''[[glpF]]''
−
* ''[[hutI]]''
+
* ''[[glpK]]''
−
* ''[[hutM]]''
+
* ''[[gmuA]]''
−
* ''[[hutU]]''
+
* ''[[gmuB]]''
 +
* ''[[gmuC]]''
 +
* ''[[gmuD]]''
 +
* ''[[gmuE]]''
 +
* ''[[gmuF]]''
 +
* ''[[gmuG]]''
 +
* ''[[gmuR]]''
 +
* ''[[gntK]]''
 +
* ''[[gntP]]''
 +
* ''[[gntR]]''
 +
* ''[[gntZ]]''
 
* ''[[rbsA]]''
 
* ''[[rbsA]]''
 
* ''[[rbsB]]''
 
* ''[[rbsB]]''
Line 23: Line 32:
 
=== Repression ===
 
=== Repression ===
 
* ''[[abrB]]''
 
* ''[[abrB]]''
−
* ''[[albA]]''
+
* ''[[ahpA]]-[[ahpT]]''  
−
* ''[[albB]]''
+
* ''[[antE]]''
−
* ''[[albC]]''
 
−
* ''[[albD]]''
 
−
* ''[[albE]]''
 
−
* ''[[albF]]''
 
−
* ''[[albG]]''
 
 
* ''[[aprE]]''
 
* ''[[aprE]]''
 
* ''[[asnH]]''
 
* ''[[asnH]]''
Line 38: Line 42:
 
* ''[[bacE]]''
 
* ''[[bacE]]''
 
* ''[[bacF]]''
 
* ''[[bacF]]''
 +
* ''[[bdbB]]''
 +
* ''[[bdhA]]''
 +
* ''[[besA]]''
 +
* ''[[bmrB]]-[[bmrC]]-[[bmrD]]''
 +
* ''[[bslA]]''
 +
* ''[[cccA]]''
 
* ''[[comK]]''
 
* ''[[comK]]''
−
* ''[[dppA]]''
+
* ''[[csn]]''
−
* ''[[dppB]]''
+
* ''[[ctaC]]''
−
* ''[[dppC]]''
+
* ''[[ctaD]]''
−
* ''[[dppD]]''
+
* ''[[ctaE]]''
−
* ''[[dppE]]''
+
* ''[[ctaF]]''
−
* ''[[ftsA]]''
+
* ''[[ctaG]]''
−
* ''[[ftsZ]]''
+
* ''[[ctaO]]''
−
* ''[[kapB]]''
+
* ''[[cwlS]]''
−
* ''[[kinB]]''
+
* ''[[cypX]]''
−
* ''[[liaF]]''
+
* ''[[dacF]]''
−
* ''[[liaG]]''
+
* ''[[dhbA]]-[[dhbC]]-[[dhbE]]-[[dhbB]]-[[dhbF]]''
−
* ''[[liaH]]''
+
* ''[[epsA]]-[[epsB]]-[[epsC]]-[[epsD]]-[[epsE]]-[[epsF]]-[[epsG]]-[[epsH]]-[[epsI]]-[[epsJ]]-[[epsK]]-[[epsL]]-[[epsM]]-[[epsN]]-[[epsO]]''
−
* ''[[liaI]]''
 
−
* ''[[liaR]]''
 
−
* ''[[liaS]]''
 
 
* ''[[lip]]''
 
* ''[[lip]]''
−
* ''[[pbpE]]''
+
* ''[[nprE]]''
 +
* ''[[ntdR]]''
 +
* ''[[pbpH]]''
 +
* ''[[phrE]]''
 +
* ''[[phrK]]''
 +
* ''[[phy]]''
 +
* ''[[pksC]]-[[pksD]]-[[pksE]]-[[acpK]]-[[pksF]]-[[pksG]]-[[pksH]]-[[pksI]]-[[pksJ]]-[[pksL]]-[[pksM]]-[[pksN]]-[[pksR]]''  
 
* ''[[pnbA]]''
 
* ''[[pnbA]]''
 +
* ''[[ppsA]]''
 +
* ''[[ppsB]]''
 +
* ''[[ppsC]]''
 +
* ''[[ppsD]]''
 +
* ''[[ppsE]]''
 
* ''[[pspA]]''
 
* ''[[pspA]]''
−
* ''[[racX]]''
+
* ''[[qcrA]]''
 +
* ''[[qcrB]]''
 +
* ''[[qcrC]]''
 +
* ''[[rapH]]''
 +
* ''[[rapK]]''
 +
* ''[[rocA]]''
 +
* ''[[rocG]]''
 
* ''[[rok]]''
 
* ''[[rok]]''
 
* ''[[rsiW]]''
 
* ''[[rsiW]]''
−
* ''[[sboA]]''
+
* ''[[sboA]]-[[sboX]]-[[albA]]-[[albB]]-[[albC]]-[[albD]]-[[albE]]-[[albF]]-[[albG]]''
−
* ''[[sboX]]''
+
* ''[[sdpA]]-[[sdpB]]-[[sdpC]]''
−
* ''[[sdpA]]''
 
−
* ''[[sdpB]]''
 
−
* ''[[sdpC]]''
 
 
* ''[[sdpI]]''
 
* ''[[sdpI]]''
 
* ''[[sdpR]]''
 
* ''[[sdpR]]''
 +
* ''[[sigF]]''
 +
* ''[[sigG]]''
 
* ''[[sigH]]''
 
* ''[[sigH]]''
 
* ''[[sigW]]''
 
* ''[[sigW]]''
 
* ''[[sinI]]''
 
* ''[[sinI]]''
 
* ''[[sinR]]''
 
* ''[[sinR]]''
−
* ''[[sipW]]''
+
* ''[[sivA]]''
 +
* ''[[sivC]]''
 
* ''[[skfA]]''
 
* ''[[skfA]]''
 
* ''[[skfB]]''
 
* ''[[skfB]]''
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* ''[[skfG]]''
 
* ''[[skfG]]''
 
* ''[[skfH]]''
 
* ''[[skfH]]''
 +
* ''[[slrR]]''
 
* ''[[spo0E]]''
 
* ''[[spo0E]]''
 +
* ''[[spoIIAA]]''
 +
* ''[[spoIIAB]]''
 
* ''[[spoVG]]''
 
* ''[[spoVG]]''
 
* ''[[sunA]]''
 
* ''[[sunA]]''
−
* ''[[tasA]]''
+
* ''[[sunT]]-[[bdbA]]-[[sunS]]''
 +
* ''[[tapA]]-[[sipW]]-[[tasA]]''
 +
* ''[[tkmA]]-[[ptkA]]-[[ptpZ]]-[[ugd]]''
 
* ''[[tlpA]]''
 
* ''[[tlpA]]''
 +
* ''[[xynC]]''
 +
* ''[[xynD]]''
 +
* ''[[ybaJ]]''
 
* ''[[ybdN]]''
 
* ''[[ybdN]]''
 
* ''[[ybdO]]''
 
* ''[[ybdO]]''
 
* ''[[ybfO]]''
 
* ''[[ybfO]]''
 +
* ''[[ybfP]]''
 
* ''[[ycbJ]]''
 
* ''[[ycbJ]]''
 +
* ''[[ycdA]]''
 
* ''[[ycnK]]''
 
* ''[[ycnK]]''
−
* ''[[ydaF]]''
+
* ''[[yddJ]]''
 +
* ''[[yddT]]''
 +
* ''[[ydeH]]''
 +
* ''[[ydeJ]]''
 
* ''[[ydjG]]''
 
* ''[[ydjG]]''
 
* ''[[ydjH]]''
 
* ''[[ydjH]]''
−
* ''[[yfhS]]''
+
* ''[[ydjI]]''
 +
* ''[[yerI]]''
 +
* ''[[yflA]]''
 +
* ''[[yflB]]''
 +
* ''[[yfmG]]''
 +
* ''[[yfmI]]''
 
* ''[[yhaP]]''
 
* ''[[yhaP]]''
 +
* ''[[yhaQ]]''
 +
* ''[[yjcM]]''
 +
* ''[[yjdB]]''
 +
* ''[[yjdG]]''
 
* ''[[yknW]]''
 
* ''[[yknW]]''
 
* ''[[yknX]]''
 
* ''[[yknX]]''
 
* ''[[yknY]]''
 
* ''[[yknY]]''
 
* ''[[yknZ]]''
 
* ''[[yknZ]]''
−
* ''[[ylqB]]''
+
* ''[[ylaE]]''
 +
* ''[[ylbA]]''
 +
 
 +
* ''[[ymaE]]''
 +
* ''[[ymzB]]''
 +
* ''[[yncM]]''
 +
* ''[[ynzD]]''
 
* ''[[yoaW]]''
 
* ''[[yoaW]]''
 +
* ''[[yobB]]''
 +
* ''[[yobO]]''
 +
* ''[[yocD]]''
 
* ''[[yocH]]''
 
* ''[[yocH]]''
−
* ''[[yqxM]]''
+
* ''[[yokI]]''
−
* ''[[yuaB]]''
+
* ''[[yokJ]]''
 +
* ''[[yokK]]''
 +
* ''[[yokL]]''
 +
* ''[[yolA]]''
 +
* ''[[yolB]]''
 +
* ''[[yolC]]''
 +
* ''[[yomJ]]''
 +
* ''[[yoqM]]''
 +
* ''[[yorD]]''
 +
* ''[[yphE]]''
 +
* ''[[yphF]]''
 +
* ''[[yqaP]]''
 +
* ''[[yqcG]]''
 +
* ''[[yqxI]]''
 +
* ''[[yqxJ]]''
 +
* ''[[yqzG]]''
 +
* ''[[yrpD]]''
 +
* ''[[yrzI]]''
 +
* ''[[yscB]]''
 +
* ''[[yurI]]''
 
* ''[[yvcA]]''
 
* ''[[yvcA]]''
 
* ''[[yvcB]]''
 
* ''[[yvcB]]''
−
* ''[[yvlA]]''
+
* ''[[yvgO]]''
−
* ''[[yvlB]]''
+
* ''[[yvmC]]''
−
* ''[[yvlC]]''
+
* ''[[yvnA]]''
−
* ''[[yvlD]]''
+
* ''[[yvqJ]]''
 +
* ''[[yvrN]]''
 +
* ''[[yvrO]]''
 +
* ''[[yvrP]]''
 
* ''[[yvzA]]''
 
* ''[[yvzA]]''
 +
* ''[[ywbF]]''
 
* ''[[ywcE]]''
 
* ''[[ywcE]]''
 +
 
* ''[[ywoF]]''
 
* ''[[ywoF]]''
 
* ''[[yxaA]]''
 
* ''[[yxaA]]''
 
* ''[[yxaB]]''
 
* ''[[yxaB]]''
 +
* ''[[yxaJ]]''
 
* ''[[yxaL]]''
 
* ''[[yxaL]]''
 
* ''[[yxaM]]''
 
* ''[[yxaM]]''
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* ''[[yxbC]]''
 
* ''[[yxbC]]''
 
* ''[[yxbD]]''
 
* ''[[yxbD]]''
 +
* ''[[yxeD]]''
 
* ''[[yxnB]]''
 
* ''[[yxnB]]''
 
* ''[[yxzE]]''
 
* ''[[yxzE]]''
−
* ''[[yydF]]''
+
* ''[[yydF]]-[[yydG]]-[[yydH]]-[[yydI]]-[[yydJ]]''
−
* ''[[yydG]]''
+
 
−
* ''[[yydH]]''
+
= Important publications on the [[AbrB]] [[regulon]]:  =
−
* ''[[yydI]]''
+
<pubmed>20817675,18840696 23580539</pubmed>
−
* ''[[yydJ]]''
+
 
 +
=Back to [[regulons]]=

Latest revision as of 16:55, 26 February 2016

Regulator

AbrB

Genes in this regulon

Activation

Repression

Important publications on the AbrB regulon:

Onuma Chumsakul, Kensuke Nakamura, Tetsuya Kurata, Tomoaki Sakamoto, Jon L Hobman, Naotake Ogasawara, Taku Oshima, Shu Ishikawa
High-resolution mapping of in vivo genomic transcription factor binding sites using in situ DNase I footprinting and ChIP-seq.
DNA Res: 2013, 20(4);325-38
[PubMed:23580539] [WorldCat.org] [DOI] (I p)

Onuma Chumsakul, Hiroki Takahashi, Taku Oshima, Takahiro Hishimoto, Shigehiko Kanaya, Naotake Ogasawara, Shu Ishikawa
Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation.
Nucleic Acids Res: 2011, 39(2);414-28
[PubMed:20817675] [WorldCat.org] [DOI] (I p)

Allison V Banse, Arnaud Chastanet, Lilah Rahn-Lee, Errett C Hobbs, Richard Losick
Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis.
Proc Natl Acad Sci U S A: 2008, 105(40);15547-52
[PubMed:18840696] [WorldCat.org] [DOI] (I p)


Back to regulons

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