Difference between revisions of "AbrB regulon"

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(→‎Repression)
(→‎Repression)
 
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=== Repression ===
 
=== Repression ===
 
* ''[[abrB]]''
 
* ''[[abrB]]''
−
* ''[[albA]]''
+
* ''[[ahpA]]-[[ahpT]]''  
−
* ''[[albB]]''
 
−
* ''[[albC]]''
 
−
* ''[[albD]]''
 
−
* ''[[albE]]''
 
−
* ''[[albF]]''
 
−
* ''[[albG]]''
 
 
* ''[[antE]]''
 
* ''[[antE]]''
 
* ''[[aprE]]''
 
* ''[[aprE]]''
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* ''[[bacE]]''
 
* ''[[bacE]]''
 
* ''[[bacF]]''
 
* ''[[bacF]]''
−
* ''[[bdbA]]''
 
 
* ''[[bdbB]]''
 
* ''[[bdbB]]''
 
* ''[[bdhA]]''
 
* ''[[bdhA]]''
 
* ''[[besA]]''
 
* ''[[besA]]''
 +
* ''[[bmrB]]-[[bmrC]]-[[bmrD]]''
 +
* ''[[bslA]]''
 
* ''[[cccA]]''
 
* ''[[cccA]]''
 
* ''[[comK]]''
 
* ''[[comK]]''
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* ''[[cypX]]''
 
* ''[[cypX]]''
 
* ''[[dacF]]''
 
* ''[[dacF]]''
−
* ''[[dhbA]]''
+
* ''[[dhbA]]-[[dhbC]]-[[dhbE]]-[[dhbB]]-[[dhbF]]''
−
* ''[[dhbB]]''
+
* ''[[epsA]]-[[epsB]]-[[epsC]]-[[epsD]]-[[epsE]]-[[epsF]]-[[epsG]]-[[epsH]]-[[epsI]]-[[epsJ]]-[[epsK]]-[[epsL]]-[[epsM]]-[[epsN]]-[[epsO]]''
−
* ''[[dhbC]]''
 
−
* ''[[dhbE]]''
 
−
* ''[[dhbF]]''
 
−
* ''[[dppA]]''
 
−
* ''[[dppB]]''
 
−
* ''[[dppC]]''
 
−
* ''[[dppD]]''
 
−
* ''[[dppE]]''
 
−
* ''[[epsA]]''
 
−
* ''[[epsB]]''
 
−
* ''[[epsC]]''
 
−
* ''[[epsD]]''
 
−
* ''[[epsE]]''
 
−
* ''[[epsF]]''
 
−
* ''[[epsG]]''
 
−
* ''[[epsH]]''
 
−
* ''[[epsI]]''
 
−
* ''[[epsJ]]''
 
−
* ''[[epsK]]''
 
−
* ''[[epsL]]''
 
−
* ''[[epsM]]''
 
−
* ''[[epsN]]''
 
−
* ''[[epsO]]''
 
−
* ''[[ftsA]]''
 
−
* ''[[ftsZ]]''
 
−
* ''[[kapB]]''
 
−
* ''[[kinB]]''
 
 
* ''[[lip]]''
 
* ''[[lip]]''
 
* ''[[nprE]]''
 
* ''[[nprE]]''
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* ''[[phrK]]''
 
* ''[[phrK]]''
 
* ''[[phy]]''
 
* ''[[phy]]''
 +
* ''[[pksC]]-[[pksD]]-[[pksE]]-[[acpK]]-[[pksF]]-[[pksG]]-[[pksH]]-[[pksI]]-[[pksJ]]-[[pksL]]-[[pksM]]-[[pksN]]-[[pksR]]''
 
* ''[[pnbA]]''
 
* ''[[pnbA]]''
 
* ''[[ppsA]]''
 
* ''[[ppsA]]''
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* ''[[ppsE]]''
 
* ''[[ppsE]]''
 
* ''[[pspA]]''
 
* ''[[pspA]]''
−
* ''[[ptkA]]''
 
−
* ''[[ptpZ]]''
 
 
* ''[[qcrA]]''
 
* ''[[qcrA]]''
 
* ''[[qcrB]]''
 
* ''[[qcrB]]''
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* ''[[rok]]''
 
* ''[[rok]]''
 
* ''[[rsiW]]''
 
* ''[[rsiW]]''
−
* ''[[sboA]]''
+
* ''[[sboA]]-[[sboX]]-[[albA]]-[[albB]]-[[albC]]-[[albD]]-[[albE]]-[[albF]]-[[albG]]''
−
* ''[[sboX]]''
+
* ''[[sdpA]]-[[sdpB]]-[[sdpC]]''
−
* ''[[sdpA]]''
 
−
* ''[[sdpB]]''
 
−
* ''[[sdpC]]''
 
 
* ''[[sdpI]]''
 
* ''[[sdpI]]''
 
* ''[[sdpR]]''
 
* ''[[sdpR]]''
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* ''[[sinI]]''
 
* ''[[sinI]]''
 
* ''[[sinR]]''
 
* ''[[sinR]]''
−
* ''[[sipW]]''
+
* ''[[sivA]]''
 +
* ''[[sivC]]''
 
* ''[[skfA]]''
 
* ''[[skfA]]''
 
* ''[[skfB]]''
 
* ''[[skfB]]''
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* ''[[spoVG]]''
 
* ''[[spoVG]]''
 
* ''[[sunA]]''
 
* ''[[sunA]]''
−
* ''[[sunT]]''
+
* ''[[sunT]]-[[bdbA]]-[[sunS]]''
−
* ''[[tapA]]''
+
* ''[[tapA]]-[[sipW]]-[[tasA]]''
−
* ''[[tasA]]''
+
* ''[[tkmA]]-[[ptkA]]-[[ptpZ]]-[[ugd]]''
−
* ''[[tkmA]]''
 
 
* ''[[tlpA]]''
 
* ''[[tlpA]]''
 
* ''[[xynC]]''
 
* ''[[xynC]]''
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* ''[[yflB]]''
 
* ''[[yflB]]''
 
* ''[[yfmG]]''
 
* ''[[yfmG]]''
−
* ''[[yfmH]]''
 
 
* ''[[yfmI]]''
 
* ''[[yfmI]]''
 
* ''[[yhaP]]''
 
* ''[[yhaP]]''
 
* ''[[yhaQ]]''
 
* ''[[yhaQ]]''
−
* ''[[yheJ]]''
 
 
* ''[[yjcM]]''
 
* ''[[yjcM]]''
 
* ''[[yjdB]]''
 
* ''[[yjdB]]''
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* ''[[yknY]]''
 
* ''[[yknY]]''
 
* ''[[yknZ]]''
 
* ''[[yknZ]]''
−
* ''[[ykuU]]''
 
−
* ''[[ykuV]]''
 
 
* ''[[ylaE]]''
 
* ''[[ylaE]]''
 
* ''[[ylbA]]''
 
* ''[[ylbA]]''
−
* ''[[ylqB]]''
+
 
 
* ''[[ymaE]]''
 
* ''[[ymaE]]''
 
* ''[[ymzB]]''
 
* ''[[ymzB]]''
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* ''[[yolB]]''
 
* ''[[yolB]]''
 
* ''[[yolC]]''
 
* ''[[yolC]]''
−
* ''[[yolJ]]''
 
 
* ''[[yomJ]]''
 
* ''[[yomJ]]''
 
* ''[[yoqM]]''
 
* ''[[yoqM]]''
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* ''[[yrzI]]''
 
* ''[[yrzI]]''
 
* ''[[yscB]]''
 
* ''[[yscB]]''
−
* ''[[yuaB]]''
 
 
* ''[[yurI]]''
 
* ''[[yurI]]''
 
* ''[[yvcA]]''
 
* ''[[yvcA]]''
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* ''[[ywbF]]''
 
* ''[[ywbF]]''
 
* ''[[ywcE]]''
 
* ''[[ywcE]]''
−
* ''[[yweA]]''
+
 
 
* ''[[ywoF]]''
 
* ''[[ywoF]]''
 
* ''[[yxaA]]''
 
* ''[[yxaA]]''
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* ''[[yxnB]]''
 
* ''[[yxnB]]''
 
* ''[[yxzE]]''
 
* ''[[yxzE]]''
−
* ''[[yydF]]''
+
* ''[[yydF]]-[[yydG]]-[[yydH]]-[[yydI]]-[[yydJ]]''
−
* ''[[yydG]]''
 
−
* ''[[yydH]]''
 
−
* ''[[yydI]]''
 
−
* ''[[yydJ]]''
 
−
 
 
−
 
 
−
* ''[[abrB]]''
 
−
* ''[[albA]]''
 
−
* ''[[albB]]''
 
−
* ''[[albC]]''
 
−
* ''[[albD]]''
 
−
* ''[[albE]]''
 
−
* ''[[albF]]''
 
−
* ''[[albG]]''
 
−
* ''[[aprE]]''
 
−
* ''[[asnH]]''
 
−
* ''[[bacA]]''
 
−
* ''[[bacB]]''
 
−
* ''[[bacC]]''
 
−
* ''[[bacD]]''
 
−
* ''[[bacE]]''
 
−
* ''[[bacF]]''
 
−
* ''[[comK]]''
 
−
* ''[[dppA]]''
 
−
* ''[[dppB]]''
 
−
* ''[[dppC]]''
 
−
* ''[[dppD]]''
 
−
* ''[[dppE]]''
 
−
* ''[[ftsA]]''
 
−
* ''[[ftsZ]]''
 
−
* ''[[kapB]]''
 
−
* ''[[kinB]]''
 
−
* ''[[lip]]''
 
−
* ''[[pnbA]]''
 
−
* ''[[pspA]]''
 
−
* ''[[rok]]''
 
−
* ''[[rsiW]]''
 
−
* ''[[sboA]]''
 
−
* ''[[sboX]]''
 
−
* ''[[sdpA]]''
 
−
* ''[[sdpB]]''
 
−
* ''[[sdpC]]''
 
−
* ''[[sdpI]]''
 
−
* ''[[sdpR]]''
 
−
* ''[[sigH]]''
 
−
* ''[[sigW]]''
 
−
* ''[[sinI]]''
 
−
* ''[[sinR]]''
 
−
* ''[[skfA]]''
 
−
* ''[[skfB]]''
 
−
* ''[[skfC]]''
 
−
* ''[[skfE]]''
 
−
* ''[[skfF]]''
 
−
* ''[[skfG]]''
 
−
* ''[[skfH]]''
 
−
* ''[[spo0E]]''
 
−
* ''[[spoVG]]''
 
−
* ''[[sunA]]''
 
−
* ''[[tapA]]-[[sipW]]-[[tasA]]''
 
−
* ''[[ybdN]]''
 
−
* ''[[ybdO]]''
 
−
* ''[[ybfO]]''
 
−
* ''[[ybfP]]''
 
−
* ''[[ycbJ]]''
 
−
* ''[[ycnK]]''
 
−
* ''[[ydjG]]''
 
−
* ''[[ydjH]]''
 
−
* ''[[yhaP]]''
 
−
* ''[[yknW]]''
 
−
* ''[[yknX]]''
 
−
* ''[[yknY]]''
 
−
* ''[[yknZ]]''
 
−
* ''[[ylqB]]''
 
−
* ''[[yoaW]]''
 
−
* ''[[yocH]]''
 
−
* ''[[yuaB]]''
 
−
* ''[[yvcA]]''
 
−
* ''[[yvcB]]''
 
−
* ''[[yvzA]]''
 
−
* ''[[ywcE]]''
 
−
* ''[[ywoF]]''
 
−
* ''[[yxaA]]''
 
−
* ''[[yxaB]]''
 
−
* ''[[yxaL]]''
 
−
* ''[[yxaM]]''
 
−
* ''[[yxbA]]''
 
−
* ''[[yxbB]]''
 
−
* ''[[yxbC]]''
 
−
* ''[[yxbD]]''
 
−
* ''[[yxnB]]''
 
−
* ''[[yxzE]]''
 
−
* ''[[yydF]]''
 
−
* ''[[yydG]]''
 
−
* ''[[yydH]]''
 
−
* ''[[yydI]]''
 
−
* ''[[yydJ]]''
 
  
−
= Important publications on the [[AbrB]] [[regulon]]: {{PubMed|20817675,18840696}} =
+
= Important publications on the [[AbrB]] [[regulon]]: =
 +
<pubmed>20817675,18840696 23580539</pubmed>
  
 
=Back to [[regulons]]=
 
=Back to [[regulons]]=

Latest revision as of 16:55, 26 February 2016

Regulator

AbrB

Genes in this regulon

Activation

Repression

Important publications on the AbrB regulon:

Onuma Chumsakul, Kensuke Nakamura, Tetsuya Kurata, Tomoaki Sakamoto, Jon L Hobman, Naotake Ogasawara, Taku Oshima, Shu Ishikawa
High-resolution mapping of in vivo genomic transcription factor binding sites using in situ DNase I footprinting and ChIP-seq.
DNA Res: 2013, 20(4);325-38
[PubMed:23580539] [WorldCat.org] [DOI] (I p)

Onuma Chumsakul, Hiroki Takahashi, Taku Oshima, Takahiro Hishimoto, Shigehiko Kanaya, Naotake Ogasawara, Shu Ishikawa
Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation.
Nucleic Acids Res: 2011, 39(2);414-28
[PubMed:20817675] [WorldCat.org] [DOI] (I p)

Allison V Banse, Arnaud Chastanet, Lilah Rahn-Lee, Errett C Hobbs, Richard Losick
Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis.
Proc Natl Acad Sci U S A: 2008, 105(40);15547-52
[PubMed:18840696] [WorldCat.org] [DOI] (I p)


Back to regulons

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