Difference between revisions of "Sporulation"
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=== Sporulation proteins/ other === | === Sporulation proteins/ other === | ||
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* ''[[adhB]]'' | * ''[[adhB]]'' | ||
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* ''[[asd]]'' | * ''[[asd]]'' | ||
* ''[[asnO]]'' | * ''[[asnO]]'' | ||
| Line 179: | Line 167: | ||
* ''[[bdbC]]'' | * ''[[bdbC]]'' | ||
* ''[[bdbD]]'' | * ''[[bdbD]]'' | ||
| − | |||
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* ''[[bofA]]'' | * ''[[bofA]]'' | ||
* ''[[bofC]]'' | * ''[[bofC]]'' | ||
| − | |||
| − | |||
* ''[[ccpB]]'' | * ''[[ccpB]]'' | ||
* ''[[cdaS]]'' | * ''[[cdaS]]'' | ||
* ''[[chaA]]'' | * ''[[chaA]]'' | ||
* ''[[clpC]]'' | * ''[[clpC]]'' | ||
| − | + | ||
* ''[[coxA]]'' | * ''[[coxA]]'' | ||
* ''[[csbX]]'' | * ''[[csbX]]'' | ||
| Line 198: | Line 181: | ||
* ''[[cwlD]]'' | * ''[[cwlD]]'' | ||
* ''[[cwlH]]'' | * ''[[cwlH]]'' | ||
| − | |||
* ''[[dacB]]'' | * ''[[dacB]]'' | ||
* ''[[dacF]]'' | * ''[[dacF]]'' | ||
* ''[[dapA]]'' | * ''[[dapA]]'' | ||
* ''[[dapG]]'' | * ''[[dapG]]'' | ||
| − | |||
* ''[[divIB]]'' | * ''[[divIB]]'' | ||
* ''[[divIC]]'' | * ''[[divIC]]'' | ||
| Line 210: | Line 191: | ||
* ''[[exuT]]'' | * ''[[exuT]]'' | ||
* ''[[fabL]]'' | * ''[[fabL]]'' | ||
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* ''[[fin]]'' | * ''[[fin]]'' | ||
* ''[[fisB]]'' | * ''[[fisB]]'' | ||
* ''[[ftsY]]'' | * ''[[ftsY]]'' | ||
| − | |||
* ''[[gin]]'' | * ''[[gin]]'' | ||
* ''[[glcU]]'' | * ''[[glcU]]'' | ||
| Line 229: | Line 205: | ||
* ''[[glnP]]'' | * ''[[glnP]]'' | ||
* ''[[glnQ]]'' | * ''[[glnQ]]'' | ||
| − | |||
* ''[[htrC]]'' | * ''[[htrC]]'' | ||
| − | |||
* ''[[ispG]]'' | * ''[[ispG]]'' | ||
* ''[[kamA]]'' | * ''[[kamA]]'' | ||
| − | |||
* ''[[katX]]'' | * ''[[katX]]'' | ||
| − | |||
* ''[[ksgA]]'' | * ''[[ksgA]]'' | ||
| − | + | ||
| − | |||
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* ''[[lonB]]'' | * ''[[lonB]]'' | ||
* ''[[lysA]]'' | * ''[[lysA]]'' | ||
| Line 248: | Line 217: | ||
* ''[[mcsA]]'' | * ''[[mcsA]]'' | ||
* ''[[mcsB]]'' | * ''[[mcsB]]'' | ||
| − | |||
* ''[[mmgA]]'' | * ''[[mmgA]]'' | ||
* ''[[mmgB]]'' | * ''[[mmgB]]'' | ||
| Line 254: | Line 222: | ||
* ''[[mmgD]]'' | * ''[[mmgD]]'' | ||
* ''[[mmgE]]'' | * ''[[mmgE]]'' | ||
| − | |||
* ''[[murB]]'' | * ''[[murB]]'' | ||
* ''[[murG]]'' | * ''[[murG]]'' | ||
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| − | |||
| − | |||
* ''[[mutTA]]'' | * ''[[mutTA]]'' | ||
| − | |||
* ''[[nfo]]'' | * ''[[nfo]]'' | ||
| − | |||
* ''[[pbpF]]'' | * ''[[pbpF]]'' | ||
* ''[[pbpG]]'' | * ''[[pbpG]]'' | ||
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* ''[[phoR]]'' | * ''[[phoR]]'' | ||
* ''[[prkA]]'' | * ''[[prkA]]'' | ||
| − | |||
| − | |||
* ''[[remA]]'' | * ''[[remA]]'' | ||
* ''[[rsfA]]'' | * ''[[rsfA]]'' | ||
| + | |||
* ''[[sbp]]'' | * ''[[sbp]]'' | ||
* ''[[scoA]]'' | * ''[[scoA]]'' | ||
* ''[[scoB]]'' | * ''[[scoB]]'' | ||
* ''[[seaA]]'' | * ''[[seaA]]'' | ||
| − | |||
* ''[[sigF]]'' | * ''[[sigF]]'' | ||
* ''[[sigG]]'' | * ''[[sigG]]'' | ||
| Line 292: | Line 252: | ||
* ''[[spoIIAB]]'' | * ''[[spoIIAB]]'' | ||
* ''[[spoIID]]'' | * ''[[spoIID]]'' | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
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* ''[[spoIIIAA]]'' | * ''[[spoIIIAA]]'' | ||
* ''[[spoIIIAB]]'' | * ''[[spoIIIAB]]'' | ||
| Line 308: | Line 262: | ||
* ''[[spoIIIC]]'' | * ''[[spoIIIC]]'' | ||
* ''[[spoIIID]]'' | * ''[[spoIIID]]'' | ||
| + | * ''[[spoIIM]]'' | ||
| + | * ''[[spoIIP]]'' | ||
| + | * ''[[spoIIQ]]'' | ||
| + | * ''[[spoIIR]]'' | ||
| + | * ''[[spoIISA]]'' | ||
* ''[[spoIVA]]'' | * ''[[spoIVA]]'' | ||
* ''[[spoIVB]]'' | * ''[[spoIVB]]'' | ||
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* ''[[spoVAF]]'' | * ''[[spoVAF]]'' | ||
* ''[[spoVB]]'' | * ''[[spoVB]]'' | ||
| − | |||
* ''[[spoVD]]'' | * ''[[spoVD]]'' | ||
* ''[[spoVE]]'' | * ''[[spoVE]]'' | ||
* ''[[spoVFA]]'' | * ''[[spoVFA]]'' | ||
* ''[[spoVFB]]'' | * ''[[spoVFB]]'' | ||
| + | |||
* ''[[spoVIF]]'' | * ''[[spoVIF]]'' | ||
* ''[[spoVK]]'' | * ''[[spoVK]]'' | ||
| + | |||
* ''[[spoVR]]'' | * ''[[spoVR]]'' | ||
* ''[[spoVT]]'' | * ''[[spoVT]]'' | ||
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* ''[[sscA]]'' | * ''[[sscA]]'' | ||
* ''[[stoA]]'' | * ''[[stoA]]'' | ||
| − | + | ||
* ''[[tlp]]'' | * ''[[tlp]]'' | ||
* ''[[tuaF]]'' | * ''[[tuaF]]'' | ||
* ''[[tuaG]]'' | * ''[[tuaG]]'' | ||
* ''[[tuaH]]'' | * ''[[tuaH]]'' | ||
| − | |||
* ''[[usd]]'' | * ''[[usd]]'' | ||
* ''[[uxaA]]'' | * ''[[uxaA]]'' | ||
* ''[[uxaB]]'' | * ''[[uxaB]]'' | ||
* ''[[uxuA]]'' | * ''[[uxuA]]'' | ||
| + | |||
* ''[[yabP]]'' | * ''[[yabP]]'' | ||
* ''[[yabQ]]'' | * ''[[yabQ]]'' | ||
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* ''[[yckC]]'' | * ''[[yckC]]'' | ||
* ''[[yckD]]'' | * ''[[yckD]]'' | ||
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* ''[[ydcA]]'' | * ''[[ydcA]]'' | ||
* ''[[ydcC]]'' | * ''[[ydcC]]'' | ||
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* ''[[ydgA]]'' | * ''[[ydgA]]'' | ||
* ''[[ydgB]]'' | * ''[[ydgB]]'' | ||
| + | |||
* ''[[ydhF]]'' | * ''[[ydhF]]'' | ||
* ''[[ydjP]]'' | * ''[[ydjP]]'' | ||
| − | |||
| − | |||
* ''[[yeaA]]'' | * ''[[yeaA]]'' | ||
* ''[[yesJ]]'' | * ''[[yesJ]]'' | ||
* ''[[yesK]]'' | * ''[[yesK]]'' | ||
| − | |||
* ''[[yfnD]]'' | * ''[[yfnD]]'' | ||
* ''[[yfnE]]'' | * ''[[yfnE]]'' | ||
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* ''[[yfnG]]'' | * ''[[yfnG]]'' | ||
* ''[[yfnH]]'' | * ''[[yfnH]]'' | ||
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* ''[[yhaL]]'' | * ''[[yhaL]]'' | ||
| + | |||
* ''[[yhbH]]'' | * ''[[yhbH]]'' | ||
* ''[[yhcM]]'' | * ''[[yhcM]]'' | ||
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* ''[[yhcQ]]'' | * ''[[yhcQ]]'' | ||
* ''[[yhcV]]'' | * ''[[yhcV]]'' | ||
| − | + | ||
| + | |||
* ''[[yhfM]]'' | * ''[[yhfM]]'' | ||
* ''[[yhfW]]'' | * ''[[yhfW]]'' | ||
| + | |||
* ''[[yhxC]]'' | * ''[[yhxC]]'' | ||
| − | + | ||
| − | |||
* ''[[yisZ]]'' | * ''[[yisZ]]'' | ||
| − | |||
| − | |||
* ''[[yitA]]'' | * ''[[yitA]]'' | ||
* ''[[yitB]]'' | * ''[[yitB]]'' | ||
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* ''[[yitF]]'' | * ''[[yitF]]'' | ||
* ''[[yitG]]'' | * ''[[yitG]]'' | ||
| − | |||
* ''[[yjaV]]'' | * ''[[yjaV]]'' | ||
* ''[[yjbA]]'' | * ''[[yjbA]]'' | ||
* ''[[yjcA]]'' | * ''[[yjcA]]'' | ||
| + | |||
* ''[[yjfA]]'' | * ''[[yjfA]]'' | ||
* ''[[yjmC]]'' | * ''[[yjmC]]'' | ||
* ''[[yjmD]]'' | * ''[[yjmD]]'' | ||
* ''[[yjmF]]'' | * ''[[yjmF]]'' | ||
| − | + | ||
| − | |||
* ''[[ykvI]]'' | * ''[[ykvI]]'' | ||
| + | |||
* ''[[ykvQ]]'' | * ''[[ykvQ]]'' | ||
* ''[[ylaJ]]'' | * ''[[ylaJ]]'' | ||
| Line 424: | Line 377: | ||
* ''[[ylbB]]'' | * ''[[ylbB]]'' | ||
* ''[[ylbC]]'' | * ''[[ylbC]]'' | ||
| + | |||
* ''[[ylbE]]'' | * ''[[ylbE]]'' | ||
* ''[[ylbJ]]'' | * ''[[ylbJ]]'' | ||
* ''[[ylmC]]'' | * ''[[ylmC]]'' | ||
| − | |||
* ''[[ylxW]]'' | * ''[[ylxW]]'' | ||
* ''[[ylxX]]'' | * ''[[ylxX]]'' | ||
* ''[[ylyA]]'' | * ''[[ylyA]]'' | ||
| − | + | ||
* ''[[ymxH]]'' | * ''[[ymxH]]'' | ||
* ''[[yndA]]'' | * ''[[yndA]]'' | ||
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* ''[[yngJ]]'' | * ''[[yngJ]]'' | ||
* ''[[yoaR]]'' | * ''[[yoaR]]'' | ||
| − | |||
* ''[[yoaW]]'' | * ''[[yoaW]]'' | ||
* ''[[yobW]]'' | * ''[[yobW]]'' | ||
* ''[[yocL]]'' | * ''[[yocL]]'' | ||
| − | |||
* ''[[yodH]]'' | * ''[[yodH]]'' | ||
| − | + | ||
* ''[[yodP]]'' | * ''[[yodP]]'' | ||
* ''[[yodQ]]'' | * ''[[yodQ]]'' | ||
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* ''[[yodS]]'' | * ''[[yodS]]'' | ||
* ''[[yodT]]'' | * ''[[yodT]]'' | ||
| + | |||
* ''[[yokU]]'' | * ''[[yokU]]'' | ||
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[yozQ]]'' | * ''[[yozQ]]'' | ||
| + | |||
* ''[[ypfB]]'' | * ''[[ypfB]]'' | ||
* ''[[yphA]]'' | * ''[[yphA]]'' | ||
* ''[[ypjB]]'' | * ''[[ypjB]]'' | ||
* ''[[ypqA]]'' | * ''[[ypqA]]'' | ||
| − | |||
| − | |||
* ''[[ypzA]]'' | * ''[[ypzA]]'' | ||
| − | |||
| − | |||
* ''[[yqcK]]'' | * ''[[yqcK]]'' | ||
* ''[[yqfC]]'' | * ''[[yqfC]]'' | ||
| Line 484: | Line 429: | ||
* ''[[yqxA]]'' | * ''[[yqxA]]'' | ||
* ''[[yqzG]]'' | * ''[[yqzG]]'' | ||
| − | |||
* ''[[yrkC]]'' | * ''[[yrkC]]'' | ||
* ''[[yrrD]]'' | * ''[[yrrD]]'' | ||
* ''[[yrrS]]'' | * ''[[yrrS]]'' | ||
| − | |||
| − | |||
* ''[[ytaF]]'' | * ''[[ytaF]]'' | ||
| − | |||
* ''[[ytcC]]'' | * ''[[ytcC]]'' | ||
* ''[[yteA]]'' | * ''[[yteA]]'' | ||
* ''[[yteV]]'' | * ''[[yteV]]'' | ||
* ''[[ytfI]]'' | * ''[[ytfI]]'' | ||
| − | + | ||
| − | |||
* ''[[ytlA]]'' | * ''[[ytlA]]'' | ||
* ''[[ytlC]]'' | * ''[[ytlC]]'' | ||
| Line 505: | Line 445: | ||
* ''[[ytvI]]'' | * ''[[ytvI]]'' | ||
* ''[[ytxC]]'' | * ''[[ytxC]]'' | ||
| − | |||
| − | |||
* ''[[yuiC]]'' | * ''[[yuiC]]'' | ||
| + | |||
* ''[[yurS]]'' | * ''[[yurS]]'' | ||
* ''[[yusN]]'' | * ''[[yusN]]'' | ||
* ''[[yuzA]]'' | * ''[[yuzA]]'' | ||
| + | |||
* ''[[yvdQ]]'' | * ''[[yvdQ]]'' | ||
* ''[[yveA]]'' | * ''[[yveA]]'' | ||
| − | |||
| − | |||
* ''[[ywcA]]'' | * ''[[ywcA]]'' | ||
* ''[[ywcB]]'' | * ''[[ywcB]]'' | ||
| − | |||
* ''[[ywjD]]'' | * ''[[ywjD]]'' | ||
* ''[[ywjE]]'' | * ''[[ywjE]]'' | ||
| + | |||
* ''[[ywnJ]]'' | * ''[[ywnJ]]'' | ||
| − | |||
* ''[[ywrJ]]'' | * ''[[ywrJ]]'' | ||
* ''[[yxeD]]'' | * ''[[yxeD]]'' | ||
| Line 528: | Line 465: | ||
* ''[[yyaC]]'' | * ''[[yyaC]]'' | ||
* ''[[yyaD]]'' | * ''[[yyaD]]'' | ||
| − | |||
=== Newly identified sporulation proteins (based on transcription profiling) === | === Newly identified sporulation proteins (based on transcription profiling) === | ||
Revision as of 12:27, 24 April 2014
| Parent categories | |
| Neighbouring categories |
|
| Related categories | |
Contents
- 1 Genes in this functional category
- 2 Important reviews
- 3 Important original publications
- 4 Important web site: SporeWeb
- 5 Back to categories
Genes in this functional category
Spore coat proteins
Class I
- these proteins completly cover the membrane around the forespore
- early localizing spore coat proteins
Class II
- these proteins localize simultaneously with the class I proteins but begin to encase the spore only after engulfment is complete
- early localizing spore coat proteins
Class III
- these proteins localize simultaneously with the class I and class II proteins but start to encase the spore only after the appearance of phase dark spores (hr 4.5)
- early localizing spore coat proteins
Class IV
- late localizing spore coat proteins (only after completion of engulfment)
- intermediate between classes III and V
Class V
- late localizing spore coat proteins (only after completion of engulfment)
- localize exclusively to phase dark spores
- localize simultaneously to both poles of the spore
Class VI
- late localizing spore coat proteins (only after completion of engulfment)
- most delayed initial localization
- localize excluseively to phase bright spores
not yet assigned
- cgeA
- cgeB
- cgeC
- cgeD
- cgeE
- cmpA
- cotC
- cotF
- cotH
- cotI
- cotJA
- cotJB
- cotJC
- cotR
- cotSA
- cotV
- cotX
- cotY
- gerQ
- gerR
- gerT
- ldt
- safA
- yabG
- ygaK
- ydhD
- yhbB
- yheC
- yisJ
- yjdH
- ykvP
- yobN
- yodI
- ypeP
- yqfT
- ywqH
Important publications on the spore coat
Spore coat protein/ based on similarity
Small acid-soluble spore proteins
Non-homologous end joining DNA repair
Sporulation proteins/ other
- coxA
- csbX
- ctaA
- ctpB
- cwlC
- cwlD
- cwlH
- dacB
- dacF
- dapA
- dapG
- divIB
- divIC
- exoA
- exuR
- exuT
- fabL
- fin
- fisB
- ftsY
- gin
- glcU
- glgA
- glgB
- glgC
- glgD
- glgP
- glnH
- glnM
- glnP
- glnQ
- htrC
- ispG
- kamA
- katX
- ksgA
- lonB
- lysA
- lytH
- mbl
- mcsA
- mcsB
- mmgA
- mmgB
- mmgC
- mmgD
- mmgE
- murB
- murG
- mutTA
- nfo
- pbpF
- pbpG
- pbpI
- pdaA
- pdaB
- phoB
- phoP
- phoR
- prkA
- remA
- rsfA
- sbp
- scoA
- scoB
- seaA
- sigF
- sigG
- sodF
- splA
- splB
- spmA
- spmB
- spoIIAA
- spoIIAB
- spoIID
- spoIIIAA
- spoIIIAB
- spoIIIAC
- spoIIIAD
- spoIIIAE
- spoIIIAF
- spoIIIAG
- spoIIIAH
- spoIIIC
- spoIIID
- spoIIM
- spoIIP
- spoIIQ
- spoIIR
- spoIISA
- spoIVA
- spoIVB
- spoIVCA
- spoIVCB
- spoIVFA
- spoIVFB
- spoVAA
- spoVAB
- spoVAC
- spoVAF
- spoVB
- spoVD
- spoVE
- spoVFA
- spoVFB
- ypfB
- yphA
- ypjB
- ypqA
- ypzA
- yqcK
- yqfC
- yqfD
- yqfQ
- yqfU
- yqfX
- yqfZ
- yqhG
- yqhH
- yqhP
- yqhQ
- yqiQ
- yqxA
- yqzG
- yrkC
- yrrD
- yrrS
- ytaF
- ytcC
- yteA
- yteV
- ytfI
Newly identified sporulation proteins (based on transcription profiling)
- araL
- araM
- citA
- citH
- lplD
- xpaC
- yaaC
- yabS
- ybbC
- ybeF
- ybfJ
- ycgI
- ycgH
- ycgL
- yerA
- yetF
- yfhM
- yfhS
- yflJ
- yflN
- yfmA
- ykjA
- ykoN
- ykoP
- ykoQ
- ykoS
- ykoT
- ykoY
- ykpC
- ykuS
- ykwB
- ykzD
- ykzE
- ykzH
- ylaK
- ylxY
- ymaF
- ymfH
- ymfI
- ymfJ
- yndM
- ynfE
- yngK
- yngL
- ynzE
- yoaI
- yoaM
- yoaQ
- yqgE
- yqgO
- yqhO
- yqhR
- yqhV
- yqjB
- yqjC
- yrbE
- yrbG
- yrdN
- yrrI
- yrrT
- yrzA
- yrzE
- yrzK
- ysnE
- ytcA
- ytcB
- ytdA
- yteT
- ytvB
- ytwI
- ytzC
- ytzH
- yubC
- yueG
- yufS
- yugF
- yumB
- yunC
- yurZ
- yusW
- yutC
- yutG
- yuzE
- yuzF
- yvaC
- yvaG
- yvaK
- yvaM
- yvdA
- ywaF
- ywbB
- ywkF
- ywmA
- ywnG
- ywoC
- ywqH
- ywqI
- ywqK
- ywqL
- ywrK
- yxbA
- yyaL
- yybP
- yycN
- yycO
- yycP
- yycQ
- yyzB
Important reviews
Michael Y Galperin, Sergei L Mekhedov, Pere Puigbo, Sergey Smirnov, Yuri I Wolf, Daniel J Rigden
Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes.
Environ Microbiol: 2012, 14(11);2870-90
[PubMed:22882546]
[WorldCat.org]
[DOI]
(I p)
Douglas Higgins, Jonathan Dworkin
Recent progress in Bacillus subtilis sporulation.
FEMS Microbiol Rev: 2012, 36(1);131-48
[PubMed:22091839]
[WorldCat.org]
[DOI]
(I p)
Michiel J L de Hoon, Patrick Eichenberger, Dennis Vitkup
Hierarchical evolution of the bacterial sporulation network.
Curr Biol: 2010, 20(17);R735-45
[PubMed:20833318]
[WorldCat.org]
[DOI]
(I p)
Imrich Barák, Anthony J Wilkinson
Where asymmetry in gene expression originates.
Mol Microbiol: 2005, 57(3);611-20
[PubMed:16045607]
[WorldCat.org]
[DOI]
(P p)
Michael D Yudkin, Joanna Clarkson
Differential gene expression in genetically identical sister cells: the initiation of sporulation in Bacillus subtilis.
Mol Microbiol: 2005, 56(3);578-89
[PubMed:15819616]
[WorldCat.org]
[DOI]
(P p)
Imrich Barák, Ezio Ricca, Simon M Cutting
From fundamental studies of sporulation to applied spore research.
Mol Microbiol: 2005, 55(2);330-8
[PubMed:15659154]
[WorldCat.org]
[DOI]
(P p)
Patrick J Piggot, David W Hilbert
Sporulation of Bacillus subtilis.
Curr Opin Microbiol: 2004, 7(6);579-86
[PubMed:15556029]
[WorldCat.org]
[DOI]
(P p)
David W Hilbert, Patrick J Piggot
Compartmentalization of gene expression during Bacillus subtilis spore formation.
Microbiol Mol Biol Rev: 2004, 68(2);234-62
[PubMed:15187183]
[WorldCat.org]
[DOI]
(P p)
Jeff Errington
Regulation of endospore formation in Bacillus subtilis.
Nat Rev Microbiol: 2003, 1(2);117-26
[PubMed:15035041]
[WorldCat.org]
[DOI]
(P p)
R R Freedman
Raynaud's phenomenon, lack of neurological influence.
Br J Rheumatol: 1990, 29(6);492-3
[PubMed:2257467]
[WorldCat.org]
[DOI]
(P p)
Important original publications
Important web site: SporeWeb
- SporeWeb is a dynamic web-based platform describing all stages of sporulation in B. subtilis from a gene regulatory point of view. The website is intended for all microbial researches interested in bacterial sporulation and/or gene regulatory networks and contains useful information for both sporulation experts and non-experts.
- You can find:
- detailed review-like descriptions of all sporulation stages,
- schematic representations of regulatory events during every stage,
- links to specific regulators and their regulons,
- access to detailed Excel sheets of all sporulation-specific regulons,
- Cytoscape-generated layouts of regulon interactions during a specific stage,
- a tool to generate your own Cytoscape interaction figure for specific genes of interest,
- heat maps showing expression values of all sporulation genes during the sporulation cycle (derived from Nicolas et al., 2012),
- direct links to other knowledge platforms, such as SubtiWiki,
- an extensive list of references for further detailed information.
- The website is self explanatory, but you can also take a quick look at the short introduction video.
- Importantly, the website is database driven: it can (and will) be updated as new exciting insights become available in literature.
