Difference between revisions of "CcpA regulon"

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Line 7: Line 7:
 
=== Activation ===
 
=== Activation ===
 
* ''[[ackA]]''
 
* ''[[ackA]]''
 +
* ''[[degU]]''
 
* ''[[ilvB]]-[[ilvH]]-[[ilvC]]-[[leuA]]-[[leuB]]-[[leuC]]-[[leuD]]''  
 
* ''[[ilvB]]-[[ilvH]]-[[ilvC]]-[[leuA]]-[[leuB]]-[[leuC]]-[[leuD]]''  
 +
* ''[[opuE]]''
 
* ''[[pta]]''
 
* ''[[pta]]''
  
 
=== Repression ===
 
=== Repression ===
 
* ''[[abbA]]-[[ykuL]]-[[ccpC]]''
 
* ''[[abbA]]-[[ykuL]]-[[ccpC]]''
 +
* ''[[abf2]]''
 +
* ''[[abnA]]''
 
* ''[[abn2]]''
 
* ''[[abn2]]''
 
* ''[[acoA]]-[[acoB]]-[[acoC]]-[[acoL]]''
 
* ''[[acoA]]-[[acoB]]-[[acoC]]-[[acoL]]''
−
* ''[[acoR]]''
+
* ''[[acoR]]-[[sspH]]''
 
* ''[[acsA]]''
 
* ''[[acsA]]''
 
* ''[[acuA]]-[[acuB]]-[[acuC]]''
 
* ''[[acuA]]-[[acuB]]-[[acuC]]''
Line 20: Line 24:
 
* ''[[araA]]-[[araB]]-[[araD]]-[[araL]]-[[araM]]-[[araN]]-[[araP]]-[[araQ]]-[[abfA]]''  
 
* ''[[araA]]-[[araB]]-[[araD]]-[[araL]]-[[araM]]-[[araN]]-[[araP]]-[[araQ]]-[[abfA]]''  
 
* ''[[araE]]''
 
* ''[[araE]]''
−
* ''[[bglP]]-[[bglH]]''
+
* ''[[bglP]]-[[bglH]]-[[yxiE]]''
 
* ''[[bglS]]''
 
* ''[[bglS]]''
 
* ''[[cccA]]''
 
* ''[[cccA]]''
 
* ''[[cimH]]''
 
* ''[[cimH]]''
 +
* ''[[citB]]''
 
* ''[[citM]]-[[yflN]]''
 
* ''[[citM]]-[[yflN]]''
 
* ''[[citZ]]-[[icd]]-[[mdh]]''
 
* ''[[citZ]]-[[icd]]-[[mdh]]''
 +
* ''[[csbX]]''
 
* ''[[cstA]]''
 
* ''[[cstA]]''
 
* ''[[ctaC]]''
 
* ''[[ctaC]]''
Line 33: Line 39:
 
* ''[[dra]]-[[nupC]]-[[pdp]]''
 
* ''[[dra]]-[[nupC]]-[[pdp]]''
 
* ''[[fadB]]''
 
* ''[[fadB]]''
 +
* ''[[fadN]]-[[fadA]]-[[fadE]]''
 
* ''[[galK]]-[[galT]]''
 
* ''[[galK]]-[[galT]]''
 
* ''[[glpD]]''
 
* ''[[glpD]]''
Line 39: Line 46:
 
* ''[[gmuB]]-[[gmuA]]-[[gmuC]]-[[gmuD]]-[[gmuR]]-[[gmuE]]-[[gmuF]]-[[gmuG]]''  
 
* ''[[gmuB]]-[[gmuA]]-[[gmuC]]-[[gmuD]]-[[gmuR]]-[[gmuE]]-[[gmuF]]-[[gmuG]]''  
 
* ''[[gntR]]-[[gntK]]-[[gntP]]-[[gntZ]]''
 
* ''[[gntR]]-[[gntK]]-[[gntP]]-[[gntZ]]''
 +
* ''[[hbuT]]-[[scoA]]-[[scoB]]-[[yxjF]]''
 
* ''[[hutP]]-[[hutH]]-[[hutU]]-[[hutI]]-[[hutG]]-[[hutM]]''
 
* ''[[hutP]]-[[hutH]]-[[hutU]]-[[hutI]]-[[hutG]]-[[hutM]]''
 
* ''[[iolA]]-[[iolB]]-[[iolC]]-[[iolD]]-[[iolE]]-[[iolF]]-[[iolG]]-[[iolH]]-[[iolI]]-[[iolJ]]''
 
* ''[[iolA]]-[[iolB]]-[[iolC]]-[[iolD]]-[[iolE]]-[[iolF]]-[[iolG]]-[[iolH]]-[[iolI]]-[[iolJ]]''
 
* ''[[kdgR]]-[[kdgK]]-[[kdgA]]-[[kdgT]]''
 
* ''[[kdgR]]-[[kdgK]]-[[kdgA]]-[[kdgT]]''
−
* ''[[kduD]]''
+
* ''[[kduI]]-[[kduD]]''
−
* ''[[kduI]]''
+
* ''[[lcfA]]-[[fadR]]-[[fadB]]-[[etfB]]-[[etfA]]''
−
* ''[[lcfA]]''
+
* ''[[lcfB]]''
 
* ''[[ldt]]''
 
* ''[[ldt]]''
 
* ''[[levD]]-[[levE]]-[[levF]]-[[levG]]-[[sacC]]''
 
* ''[[levD]]-[[levE]]-[[levF]]-[[levG]]-[[sacC]]''
 
* ''[[licB]]-[[licC]]-[[licA]]-[[licH]]''
 
* ''[[licB]]-[[licC]]-[[licA]]-[[licH]]''
 
* ''[[malA]]-[[glvR]]-[[malP]]''
 
* ''[[malA]]-[[glvR]]-[[malP]]''
−
* ''[[mmgA]]''
+
* ''[[manR]]''
−
* ''[[mmgB]]''
+
* ''[[mleN]]-[[mleA]]''
−
* ''[[mmgC]]''
+
* ''[[mmgA]]-[[mmgB]]-[[mmgC]]-[[mmgD]]-[[mmgE]]-[[yqiQ]]''  
−
* ''[[mmgD]]''
+
* ''[[msmR]]-[[msmE]]-[[amyD]]-[[amyC]]-[[melA]]''
−
* ''[[mmgE]]''
+
* ''[[yxkF]]-[[msmX]]''
−
* ''[[msmX]]''
+
* ''[[mtlR]]''
 
* ''[[nagA]]''
 
* ''[[nagA]]''
−
* ''[[odhA]]''
+
* ''[[odhA]]-[[odhB]]''
−
* ''[[odhB]]''
 
 
* ''[[pel]]''
 
* ''[[pel]]''
−
* ''[[phoP]]''
+
* ''[[phoP]]-[[phoR]]''
−
* ''[[phoR]]''
 
 
* ''[[phrC]]''
 
* ''[[phrC]]''
 
* ''[[phrE]]''
 
* ''[[phrE]]''
Line 66: Line 72:
 
* ''[[qcrA]]''
 
* ''[[qcrA]]''
 
* ''[[rapF]]''
 
* ''[[rapF]]''
−
* ''[[rbsA]]''
+
* ''[[rbsR]]-[[rbsK]]-[[rbsD]]-[[rbsA]]-[[rbsC]]-[[rbsB]]''
−
* ''[[rbsB]]''
+
* ''[[refZ]]''
−
* ''[[rbsC]]''
+
* ''[[resA]]-[[resB]]-[[resC]]-[[resD]]-[[resE]]''
−
* ''[[rbsD]]''
+
* ''[[rhaEW]]-[[rhaR]]-[[rhaB]]-[[rhaM]]-[[rhaA]]''
−
* ''[[rbsK]]''
 
−
* ''[[rbsR]]''
 
−
* ''[[resA]]''
 
−
* ''[[resB]]''
 
−
* ''[[resC]]''
 
−
* ''[[resD]]''
 
−
* ''[[resE]]''
 
 
* ''[[rocG]]''
 
* ''[[rocG]]''
−
* ''[[rsbV]]''
+
* ''[[rsbV]]-[[rsbW]]-[[sigB]]-[[rsbX]]''
−
* ''[[rsbW]]''
+
* ''[[sacP]]-[[sacA]]-[[ywdA]]''
−
* ''[[rsbX]]''
+
 
−
* ''[[sacP]]-[[sacA]]''
 
−
* ''[[scoA]]''
 
−
* ''[[scoB]]''
 
−
* ''[[sigB]]''
 
 
* ''[[sigL]]''
 
* ''[[sigL]]''
−
* ''[[sspH]]''
+
* ''[[sucC]]-[[sucD]]''
−
* ''[[sucC]]''
+
* ''[[treP]]-[[treA]]-[[treR]]''
−
* ''[[sucD]]''
 
−
* ''[[treA]]''
 
−
* ''[[treP]]''
 
−
* ''[[treR]]''
 
 
* ''[[uxaC]]-[[yjmB]]-[[yjmC]]-[[yjmD]]-[[uxuA]]-[[yjmF]]-[[exuT]]-[[exuR]]-[[uxaB]]-[[uxaA]]''
 
* ''[[uxaC]]-[[yjmB]]-[[yjmC]]-[[yjmD]]-[[uxuA]]-[[yjmF]]-[[exuT]]-[[exuR]]-[[uxaB]]-[[uxaA]]''
 +
* ''[[wprA]]''
 
* ''[[xylA]]''
 
* ''[[xylA]]''
 
* ''[[xylB]]''
 
* ''[[xylB]]''
Line 105: Line 97:
 
* ''[[yozM]]''
 
* ''[[yozM]]''
 
* ''[[ypiF]]''
 
* ''[[ypiF]]''
−
* ''[[yqiQ]]''
 
 
* ''[[yqxI]]''
 
* ''[[yqxI]]''
−
* ''[[yttP]]''
 
 
* ''[[yvcI]]''
 
* ''[[yvcI]]''
 
* ''[[yvmB]]''
 
* ''[[yvmB]]''
 
* ''[[yvnA]]''
 
* ''[[yvnA]]''
−
* ''[[ywdA]]''
+
 
−
* ''[[yxiE]]''
 
−
* ''[[yxjC]]''
 
−
* ''[[yxjF]]''
 
−
* ''[[yxkF]]''
 
 
= Important publications on the [[CcpA]] regulon =
 
= Important publications on the [[CcpA]] regulon =
−
<pubmed>12850135 ,11251851,10559165, 11160890,17183215 </pubmed>
+
<pubmed>12850135 ,11251851,10559165, 11160890,17183215 22383848 22900538 26483775</pubmed>
 +
 
 +
=Back to [[regulons]]=

Latest revision as of 13:29, 4 January 2016

Regulator

CcpA

Genes in this regulon

Activation

Repression

Important publications on the CcpA regulon

Ruud Detert Oude Weme, Gerald Seidel, Oscar P Kuipers
Probing the regulatory effects of specific mutations in three major binding domains of the pleiotropic regulator CcpA of Bacillus subtilis.
Front Microbiol: 2015, 6;1051
[PubMed:26483775] [WorldCat.org] [DOI] (P e)

Bogumiła C Marciniak, Monika Pabijaniak, Anne de Jong, Robert Dűhring, Gerald Seidel, Wolfgang Hillen, Oscar P Kuipers
High- and low-affinity cre boxes for CcpA binding in Bacillus subtilis revealed by genome-wide analysis.
BMC Genomics: 2012, 13;401
[PubMed:22900538] [WorldCat.org] [DOI] (I e)

Joerg Martin Buescher, Wolfram Liebermeister, Matthieu Jules, Markus Uhr, Jan Muntel, Eric Botella, Bernd Hessling, Roelco Jacobus Kleijn, Ludovic Le Chat, François Lecointe, Ulrike Mäder, Pierre Nicolas, Sjouke Piersma, Frank Rügheimer, Dörte Becher, Philippe Bessieres, Elena Bidnenko, Emma L Denham, Etienne Dervyn, Kevin M Devine, Geoff Doherty, Samuel Drulhe, Liza Felicori, Mark J Fogg, Anne Goelzer, Annette Hansen, Colin R Harwood, Michael Hecker, Sebastian Hubner, Claus Hultschig, Hanne Jarmer, Edda Klipp, Aurélie Leduc, Peter Lewis, Frank Molina, Philippe Noirot, Sabine Peres, Nathalie Pigeonneau, Susanne Pohl, Simon Rasmussen, Bernd Rinn, Marc Schaffer, Julian Schnidder, Benno Schwikowski, Jan Maarten Van Dijl, Patrick Veiga, Sean Walsh, Anthony J Wilkinson, Jörg Stelling, Stéphane Aymerich, Uwe Sauer
Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism.
Science: 2012, 335(6072);1099-103
[PubMed:22383848] [WorldCat.org] [DOI] (I p)

Andrzej T Lulko, Girbe Buist, Jan Kok, Oscar P Kuipers
Transcriptome analysis of temporal regulation of carbon metabolism by CcpA in Bacillus subtilis reveals additional target genes.
J Mol Microbiol Biotechnol: 2007, 12(1-2);82-95
[PubMed:17183215] [WorldCat.org] [DOI] (P p)

Hans-Matti Blencke, Georg Homuth, Holger Ludwig, Ulrike Mäder, Michael Hecker, Jörg Stülke
Transcriptional profiling of gene expression in response to glucose in Bacillus subtilis: regulation of the central metabolic pathways.
Metab Eng: 2003, 5(2);133-49
[PubMed:12850135] [WorldCat.org] [DOI] (P p)

M S Moreno, B L Schneider, R R Maile, W Weyler, M H Saier
Catabolite repression mediated by the CcpA protein in Bacillus subtilis: novel modes of regulation revealed by whole-genome analyses.
Mol Microbiol: 2001, 39(5);1366-81
[PubMed:11251851] [WorldCat.org] [DOI] (P p)

K Yoshida, K Kobayashi, Y Miwa, C M Kang, M Matsunaga, H Yamaguchi, S Tojo, M Yamamoto, R Nishi, N Ogasawara, T Nakayama, Y Fujita
Combined transcriptome and proteome analysis as a powerful approach to study genes under glucose repression in Bacillus subtilis.
Nucleic Acids Res: 2001, 29(3);683-92
[PubMed:11160890] [WorldCat.org] [DOI] (I p)

S Tobisch, D Zühlke, J Bernhardt, J Stülke, M Hecker
Role of CcpA in regulation of the central pathways of carbon catabolism in Bacillus subtilis.
J Bacteriol: 1999, 181(22);6996-7004
[PubMed:10559165] [WorldCat.org] [DOI] (P p)


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