Difference between revisions of "Utilization of specific carbon sources"
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* 2.2.2. [[Utilization of specific carbon sources]] | * 2.2.2. [[Utilization of specific carbon sources]] | ||
|Related= | |Related= | ||
| − | + | * [[CcpA regulon]] | |
|}} | |}} | ||
| Line 13: | Line 13: | ||
=== Utilization of organic acids === | === Utilization of organic acids === | ||
| − | * [[acsA]] | + | * ''[[acsA]]'' |
| − | * [[acuA]] | + | * ''[[acuA]]'' |
| − | * [[acuC]] | + | * ''[[acuC]]'' |
| − | * [[cimH]] | + | * ''[[cimH]]'' |
| − | * [[citH]] | + | * ''[[citH]]'' |
| − | * [[citM]] | + | * ''[[citM]]'' |
| − | * [[citS]] | + | * ''[[citS]]'' |
| − | * [[citT]] | + | * ''[[citT]]'' |
| − | * [[dctB]] | + | * ''[[dctB]]'' |
| − | * [[dctP]] | + | * ''[[dctP]]'' |
| − | * [[dctR]] | + | * ''[[dctR]]'' |
| − | * [[dctS]] | + | * ''[[dctS]]'' |
| − | * [[lutA]] | + | * ''[[hbuT]]'' |
| − | * [[lutB]] | + | * ''[[lutA]]'' |
| − | * [[lutC]] | + | * ''[[lutB]]'' |
| − | * [[lutP]] | + | * ''[[lutC]]'' |
| − | * [[lutR]] | + | * ''[[lutP]]'' |
| − | * [[maeA]] | + | * ''[[lutR]]'' |
| − | * [[maeN]] | + | *'' [[lytS]]'' |
| − | * [[malK]] | + | * ''[[lytT]]'' |
| − | * [[malR]] | + | * ''[[maeA]]'' |
| − | * [[malS]] | + | * ''[[maeN]]'' |
| − | * [[mleA]] | + | * ''[[malK]]'' |
| − | * [[mleN]] | + | * ''[[malR]]'' |
| − | * [[yflS]] | + | * ''[[malS]]'' |
| − | * [[yoaB]] | + | * ''[[mleA]]'' |
| − | * [[yraO]] | + | * ''[[mleN]]'' |
| − | * [[ytsJ]] | + | * ''[[scoA]]'' |
| + | * ''[[scoB]]'' | ||
| + | * ''[[ybaR]]'' | ||
| + | * ''[[yflS]]'' | ||
| + | * ''[[yoaB]]'' | ||
| + | * ''[[yraO]]'' | ||
| + | * ''[[ysbA]]'' | ||
| + | * ''[[ytsJ]]'' | ||
| + | * ''[[yxjF]]'' | ||
=== Utilization of acetoin === | === Utilization of acetoin === | ||
| − | * [[acoA]] | + | * ''[[acoA]]'' |
| − | * [[acoB]] | + | * ''[[acoB]]'' |
| − | * [[acoC]] | + | * ''[[acoC]]'' |
| − | * [[acoL]] | + | * ''[[acoL]]'' |
| − | * [[acoR]] | + | * ''[[acoR]]'' |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
=== Utilization of glycerol/ glycerol-3-phosphate === | === Utilization of glycerol/ glycerol-3-phosphate === | ||
| − | * [[glpD]] | + | * ''[[glpD]]'' |
| − | * [[glpF]] | + | * ''[[glpF]]'' |
| − | * [[glpK]] | + | * ''[[glpK]]'' |
| − | * [[glpP]] | + | * ''[[glpP]]'' |
| − | * [[glpQ]] | + | * ''[[glpQ]]'' |
| − | * [[glpT]] | + | * ''[[glpT]]'' |
=== Utilization of ribose === | === Utilization of ribose === | ||
| − | * [[rbsA]] | + | * ''[[rbsA]]'' |
| − | * [[rbsB]] | + | * ''[[rbsB]]'' |
| − | * [[rbsC]] | + | * ''[[rbsC]]'' |
| − | * [[rbsD]] | + | * ''[[rbsD]]'' |
| − | * [[rbsK]] | + | * ''[[rbsK]]'' |
| − | * [[rbsR]] | + | * ''[[rbsR]]'' |
=== Utilization of xylan/ xylose === | === Utilization of xylan/ xylose === | ||
| − | * [[xylA]] | + | * ''[[araE]]'' |
| − | * [[xylB]] | + | * ''[[xylA]]'' |
| − | * [[xylR]] | + | * ''[[xylB]]'' |
| − | * [[xynA]] | + | * ''[[xylR]]'' |
| − | * [[xynB]] | + | * ''[[xynA]]'' |
| − | * [[xynP]] | + | * ''[[xynB]]'' |
| + | * ''[[xynP]]'' | ||
=== Utilization of arabinan/ arabinose/ arabitol === | === Utilization of arabinan/ arabinose/ arabitol === | ||
| − | * [[abf2]] | + | * ''[[abf2]]'' |
| − | * [[abfA]] | + | * ''[[abfA]]'' |
| − | * [[abn2]] | + | * ''[[abn2]]'' |
| − | * [[abnA]] | + | * ''[[abnA]]'' |
| − | * [[araA]] | + | *'' [[araA]]'' |
| − | * [[araB]] | + | * ''[[araB]]'' |
| − | * [[araD]] | + | * ''[[araD]]'' |
| − | * [[araE]] | + | * ''[[araE]]'' |
| − | * [[araN]] | + | * ''[[araN]]'' |
| − | * [[araP]] | + | * ''[[araP]]'' |
| − | * [[araQ]] | + | * ''[[araQ]]'' |
| − | * [[araR]] | + | * ''[[araR]]'' |
| − | |||
=== Utilization of fructose === | === Utilization of fructose === | ||
| − | * [[fruA]] | + | * ''[[fruA]]'' |
| − | * [[fruK]] | + | * ''[[fruK]]'' |
| − | * [[fruR]] | + | * ''[[fruR]]'' |
| − | * [[levD]] | + | * ''[[levD]]'' |
| − | * [[levE]] | + | * ''[[levE]]'' |
| − | * [[levF]] | + | * ''[[levF]]'' |
| − | * [[levG]] | + | * ''[[levG]]'' |
| − | * [[levR]] | + | * ''[[levR]]'' |
=== Utilization of galactose === | === Utilization of galactose === | ||
| − | * [[galE]] | + | * ''[[araE]]'' |
| − | * [[galK]] | + | * ''[[galE]]'' |
| − | * [[galM]] | + | * ''[[galK]]'' |
| − | * [[galT]] | + | * ''[[galM]]'' |
| + | * ''[[galT]]'' | ||
=== Utilization of mannose === | === Utilization of mannose === | ||
| − | * [[manA]] | + | * ''[[manA]]'' |
| − | * [[manP]] | + | * ''[[manP]]'' |
| − | * [[manR]] | + | * ''[[manR]]'' |
| − | * [[pmi]] | + | * ''[[pmi]]'' |
=== Utilization of mannitol === | === Utilization of mannitol === | ||
| − | * [[mtlA]] | + | * ''[[mtlA]]'' |
| − | * [[mtlD]] | + | * ''[[mtlD]]'' |
| − | * [[mtlF]] | + | * ''[[mtlF]]'' |
| − | * [[mtlR]] | + | * ''[[mtlR]]'' |
=== Utilization of glucitol === | === Utilization of glucitol === | ||
| − | * [[gutB]] | + | * ''[[gutB]]'' |
| − | * [[gutP]] | + | * ''[[gutP]]'' |
| − | * [[gutR]] | + | * ''[[gutR]]'' |
| − | |||
| − | |||
| − | |||
| − | |||
=== Utilization of gluconate === | === Utilization of gluconate === | ||
| − | * [[gntK]] | + | * ''[[gntK]]'' |
| − | * [[gntP]] | + | * ''[[gntP]]'' |
| − | * [[gntR]] | + | * ''[[gntR]]'' |
| − | * [[gntZ]] | + | * ''[[gntZ]]'' |
=== Utilization of glucarate/galactarate === | === Utilization of glucarate/galactarate === | ||
| − | * [[ycbC]] | + | * ''[[ycbC]]'' |
| − | * [[ycbD]] | + | * ''[[ycbD]]'' |
| − | * [[ycbE]] | + | * ''[[ycbE]]'' |
| − | * [[ycbF]] | + | * ''[[ycbF]]'' |
| − | * [[ycbG]] | + | * ''[[ycbG]]'' |
| − | * [[ycbH]] | + | *'' [[ycbH]]'' |
=== Utilization of hexuronate === | === Utilization of hexuronate === | ||
| − | * [[exuR]] | + | * ''[[exuR]]'' |
| − | * [[exuT]] | + | * ''[[exuT]]'' |
| − | * [[kdgA]] | + | * ''[[kdgA]]'' |
| − | * [[kdgK]] | + | * ''[[kdgK]]'' |
| − | * [[kdgR]] | + | * ''[[kdgR]]'' |
| − | * [[kdgT]] | + | * ''[[kdgT]]'' |
| − | * [[kduD]] | + | * ''[[kduD]]'' |
| − | * [[kduI]] | + | * ''[[kduI]]'' |
| − | * [[uxaA]] | + | * ''[[uxaA]]'' |
| − | * [[uxaB]] | + | * ''[[uxaB]]'' |
| − | * [[uxaC]] | + | * ''[[uxaC]]'' |
| − | * [[uxuA]] | + | * ''[[uxuA]]'' |
| − | * [[yjmB]] | + | * ''[[yjmB]]'' |
| − | * [[yjmC]] | + | * ''[[yjmC]]'' |
| − | * [[yjmD]] | + | * ''[[yjmD]]'' |
| − | * [[yjmF]] | + | * ''[[yjmF]]'' |
=== Utilization of inositol === | === Utilization of inositol === | ||
| − | * [[iolA]] | + | * ''[[iolA]]'' |
| − | * [[iolB]] | + | * ''[[iolB]]'' |
| − | * [[iolC]] | + | * ''[[iolC]]'' |
| − | * [[iolD]] | + | * ''[[iolD]]'' |
| − | * [[iolE]] | + | * ''[[iolE]]'' |
| − | * [[iolF]] | + | * ''[[iolF]]'' |
| − | * [[iolG]] | + | * ''[[iolG]]'' |
| − | * [[iolH]] | + | * ''[[iolH]]'' |
| − | * [[iolI]] | + | * ''[[iolI]]'' |
| − | * [[iolJ]] | + | * ''[[iolJ]]'' |
| − | * [[iolR]] | + | * ''[[iolR]]'' |
| − | * [[iolS]] | + | * ''[[iolS]]'' |
| − | * [[iolT]] | + | * ''[[iolT]]'' |
| − | * [[iolW]] | + | * ''[[iolW]]'' |
| − | * [[iolX]] | + | * ''[[iolX]]'' |
| + | * ''[[yfiG]]'' | ||
=== Utilization of amino sugars === | === Utilization of amino sugars === | ||
| Line 189: | Line 189: | ||
* ''[[gamA]]'' | * ''[[gamA]]'' | ||
* ''[[gamP]]'' | * ''[[gamP]]'' | ||
| + | * ''[[gamR]]'' | ||
* ''[[murP]]'' | * ''[[murP]]'' | ||
* ''[[murQ]]'' | * ''[[murQ]]'' | ||
| Line 195: | Line 196: | ||
* ''[[nagB]]'' | * ''[[nagB]]'' | ||
* ''[[nagP]]'' | * ''[[nagP]]'' | ||
| − | * ''[[ | + | * ''[[nagR]]'' |
* ''[[yurJ]]'' | * ''[[yurJ]]'' | ||
| − | |||
=== Utilization of beta-glucosides === | === Utilization of beta-glucosides === | ||
| − | * [[bglA]] | + | * ''[[bglA]]'' |
| − | * [[bglH]] | + | * ''[[bglH]]'' |
| − | * [[bglP]] | + | * ''[[bglP]]'' |
| − | * [[licT]] | + | * ''[[licT]]'' |
| − | * [[yckE]] | + | * ''[[yckE]]'' |
=== Utilization of sucrose === | === Utilization of sucrose === | ||
| − | * [[fruC]] | + | * ''[[fruC]]'' |
| − | * [[sacA]] | + | * ''[[sacA]]'' |
| − | * [[sacB]] | + | * ''[[sacB]]'' |
| − | * [[sacP]] | + | * ''[[sacP]]'' |
| − | * [[sacT]] | + | * ''[[sacT]]'' |
| − | * [[sacX]] | + | * ''[[sacX]]'' |
| − | * [[sacY]] | + | * ''[[sacY]]'' |
=== Utilization of trehalose === | === Utilization of trehalose === | ||
| − | * [[glcK]] | + | * ''[[glcK]]'' |
| − | * [[treA]] | + | * ''[[treA]]'' |
| − | * [[treP]] | + | * ''[[treP]]'' |
| − | * [[treR]] | + | * ''[[treR]]'' |
=== Utilization of melibiose === | === Utilization of melibiose === | ||
| − | * [[amyC]] | + | * ''[[amyC]]'' |
| − | * [[amyD]] | + | * ''[[amyD]]'' |
| − | * [[melA]] | + | * ''[[melA]]'' |
| − | * [[msmE]] | + | * ''[[msmE]]'' |
| − | * [[msmR]] | + | * ''[[msmR]]'' |
| − | * [[msmX]] | + | * ''[[msmX]]'' |
=== Utilization of maltose === | === Utilization of maltose === | ||
| − | * [[glcK]] | + | * ''[[glcK]]'' |
| − | * [[glvR]] | + | *'' [[glvR]]'' |
| − | * [[malA]] | + | * ''[[malA]]'' |
| − | * [[malP]] | + | * ''[[malP]]'' |
| − | * [[yvdK]] | + | * ''[[yvdK]]'' |
=== Utilization of starch/ maltodextrin === | === Utilization of starch/ maltodextrin === | ||
| − | * [[amyE]] | + | * ''[[amyE]]'' |
| − | * [[amyX]] | + | * ''[[amyX]]'' |
| − | * [[glcK]] | + | * ''[[glcK]]'' |
| − | * [[maa]] | + | * ''[[maa]]'' |
| − | * [[malL]] | + | * ''[[malL]]'' |
| − | * [[mdxE]] | + | * ''[[mdxE]]'' |
| − | * [[mdxF]] | + | * ''[[mdxF]]'' |
| − | * [[mdxG]] | + | * ''[[mdxG]]'' |
| − | * [[msmX]] | + | * ''[[msmX]]'' |
| − | * [[pgcM]] | + | * ''[[pgcM]]'' |
| − | * [[yvdE]] | + | * ''[[yvdE]]'' |
| − | * [[yvdF]] | + | * ''[[yvdF]]'' |
=== Utilization of glucomannan === | === Utilization of glucomannan === | ||
| − | * [[gmuA]] | + | * ''[[gmuA]]'' |
| − | * [[gmuB]] | + | * ''[[gmuB]]'' |
| − | * [[gmuC]] | + | * ''[[gmuC]]'' |
| − | * [[gmuD]] | + | * ''[[gmuD]]'' |
| − | * [[gmuE]] | + | * ''[[gmuE]]'' |
| − | * [[gmuF]] | + | * ''[[gmuF]]'' |
| − | * [[gmuG]] | + | * ''[[gmuG]]'' |
| − | * [[gmuR]] | + | * ''[[gmuR]]'' |
| + | |||
| + | === Utilization of rhamnose and pectin === | ||
| + | * ''[[lplD]]'' | ||
| + | * ''[[rhaA]]'' | ||
| + | * ''[[rhaB]]'' | ||
| + | * ''[[rhaEW]]'' | ||
| + | * ''[[rhaM]]'' | ||
| + | * ''[[rhaR]]'' | ||
| + | * ''[[rhiF]]'' | ||
| + | * ''[[rhiG]]'' | ||
| + | * ''[[rhiL]]'' | ||
| + | * ''[[rhiN]]'' | ||
| + | * ''[[rhgR]]'' | ||
| + | * ''[[ybcM]]'' | ||
| + | * ''[[yesT]]'' | ||
| + | * ''[[yesV]]'' | ||
| + | * ''[[yesW]]'' | ||
| + | * ''[[yesX]]'' | ||
| + | * ''[[yesY]]'' | ||
| + | * ''[[yesZ]]'' | ||
| + | * ''[[yteR]]'' | ||
| − | === Utilization of | + | === Utilization of galactan === |
| − | * [[ | + | * ''[[cycB]]'' |
| − | * [[ | + | * ''[[ganA]]'' |
| − | * [[ | + | * ''[[ganB]]'' |
| − | * [[ | + | *'' [[ganP]]'' |
| − | * [[ | + | * ''[[ganQ]]'' |
| − | * [[ | + | * ''[[lacR]]'' |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
=== Utilization of other polymeric carbohydrates === | === Utilization of other polymeric carbohydrates === | ||
| − | * [[bglC]] | + | * ''[[bglC]]'' |
| − | * [[bglS]] | + | * ''[[bglS]]'' |
| − | * [[csn]] | + | * ''[[csn]]'' |
| − | * | + | * ''[[levB]]'' |
| − | + | * ''[[levD]]'' | |
| − | + | * ''[[levE]]'' | |
| − | + | * ''[[levF]]'' | |
| − | * [[levD]] | + | * ''[[levG]]'' |
| − | * [[levE]] | + | * ''[[levR]]'' |
| − | * [[levF]] | + | * ''[[licA]]'' |
| − | * [[levG]] | + | * ''[[licB]]'' |
| − | * [[levR]] | + | * ''[[licC]]'' |
| − | * [[licA]] | + | * ''[[licH]]'' |
| − | * [[licB]] | + | * ''[[licR]]'' |
| − | * [[licC]] | + | * ''[[licT]]'' |
| − | * [[licH]] | + | * ''[[pel]]'' |
| − | * [[licR]] | + | * ''[[pelB]]'' |
| − | * [[licT]] | + | * ''[[pelC]]'' |
| − | * [[pel]] | + | * ''[[sacC]]'' |
| − | * [[pelB]] | + | * ''[[senS]]'' |
| − | * [[pelC]] | + | * ''[[xynC]]'' |
| − | * [[sacC]] | + | * ''[[xynD]]'' |
| − | * [[senS]] | + | * ''[[ysdC]]'' |
| − | * [[xynC]] | + | * ''[[ytoP]]'' |
| − | * [[xynD]] | + | * ''[[yugT]]'' |
| − | * [[ysdC]] | + | |
| − | * [[ytoP]] | + | === Utilization of other pentoses and hexoses=== |
| − | * [[yugT]] | + | * ''[[ydaE]]'' |
| − | * [[ | + | |
| − | + | == Utilization of specific carbon sources in [http://subtiwiki.uni-goettingen.de/subtipathways.html ''Subti''Pathways]: [http://subtiwiki.uni-goettingen.de/pathways/carbohydrate_metabolic_pathways.html Utilization of different carbon sources]== | |
| − | |||
==Reviews== | ==Reviews== | ||
<pubmed> 11018147 19202299 17982469 </pubmed> | <pubmed> 11018147 19202299 17982469 </pubmed> | ||
| + | =Back to [[categories]]= | ||
Latest revision as of 16:52, 26 September 2016
| Parent categories |
|
| Neighbouring categories |
|
| Related categories | |
Contents
- 1 Genes in this functional category
- 1.1 Utilization of organic acids
- 1.2 Utilization of acetoin
- 1.3 Utilization of glycerol/ glycerol-3-phosphate
- 1.4 Utilization of ribose
- 1.5 Utilization of xylan/ xylose
- 1.6 Utilization of arabinan/ arabinose/ arabitol
- 1.7 Utilization of fructose
- 1.8 Utilization of galactose
- 1.9 Utilization of mannose
- 1.10 Utilization of mannitol
- 1.11 Utilization of glucitol
- 1.12 Utilization of gluconate
- 1.13 Utilization of glucarate/galactarate
- 1.14 Utilization of hexuronate
- 1.15 Utilization of inositol
- 1.16 Utilization of amino sugars
- 1.17 Utilization of beta-glucosides
- 1.18 Utilization of sucrose
- 1.19 Utilization of trehalose
- 1.20 Utilization of melibiose
- 1.21 Utilization of maltose
- 1.22 Utilization of starch/ maltodextrin
- 1.23 Utilization of glucomannan
- 1.24 Utilization of rhamnose and pectin
- 1.25 Utilization of galactan
- 1.26 Utilization of other polymeric carbohydrates
- 1.27 Utilization of other pentoses and hexoses
- 2 Utilization of specific carbon sources in SubtiPathways: Utilization of different carbon sources
- 3 Reviews
- 4 Back to categories
Genes in this functional category
Utilization of organic acids
- acsA
- acuA
- acuC
- cimH
- citH
- citM
- citS
- citT
- dctB
- dctP
- dctR
- dctS
- hbuT
- lutA
- lutB
- lutC
- lutP
- lutR
- lytS
- lytT
- maeA
- maeN
- malK
- malR
- malS
- mleA
- mleN
- scoA
- scoB
- ybaR
- yflS
- yoaB
- yraO
- ysbA
- ytsJ
- yxjF
Utilization of acetoin
Utilization of glycerol/ glycerol-3-phosphate
Utilization of ribose
Utilization of xylan/ xylose
Utilization of arabinan/ arabinose/ arabitol
Utilization of fructose
Utilization of galactose
Utilization of mannose
Utilization of mannitol
Utilization of glucitol
Utilization of gluconate
Utilization of glucarate/galactarate
Utilization of hexuronate
Utilization of inositol
Utilization of amino sugars
Utilization of beta-glucosides
Utilization of sucrose
Utilization of trehalose
Utilization of melibiose
Utilization of maltose
Utilization of starch/ maltodextrin
Utilization of glucomannan
Utilization of rhamnose and pectin
Utilization of galactan
Utilization of other polymeric carbohydrates
- bglC
- bglS
- csn
- levB
- levD
- levE
- levF
- levG
- levR
- licA
- licB
- licC
- licH
- licR
- licT
- pel
- pelB
- pelC
- sacC
- senS
- xynC
- xynD
- ysdC
- ytoP
- yugT
Utilization of other pentoses and hexoses
Utilization of specific carbon sources in SubtiPathways: Utilization of different carbon sources
Reviews
