yloC

yloC
168

endoribonuclease

Locus
BSU_15660
Molecular weight
33.48 kDa
Isoelectric point
4.87
Protein length
291 aaSequenceBlast
Gene length
876 bpSequenceBlast
Function
unknown
Product
endoribonuclease YloC
Essential
no
Synonyms
yloC
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1561 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
1,640,720  1,641,595
The protein
Catalyzed reaction/ biological activity
cleavage of single-stranded RNA, preferentially at U residues PubMed
Protein family
UPF0701 family (single member, according to UniProt)
Cofactors
Mn2+ PubMed
Structure
8HVJ (PDB) (from E. coli, 30% identity) PubMed
8VES (PDB) (from E. coli, 30% identity) PubMed
O34441 (AlphaFold)
Expression and Regulation
Operons
Genes
yloC-remA-gmk-yloH
Description
PubMed
Regulation
expressed during vegetative growth and early during sporulation in the forespore (SigF) PubMed
Sigma factors
SigF: sigma factor, PubMed, in sigF regulon
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yloC->yloH

2025-04-04 08:01:09

Bzhu

143

b4ed2f235ea58a2cb7be55cafee822b895fe00c8

099190FEE74E539BB75FE227F5793536D7B467E8

Genes
yloC-remA-gmk-yloH-coaBC-priA-defA-fmt-yloM-yloN
Description
PubMed
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yloC->yloN

2025-04-04 08:04:53

Jstuelk

155

67080d1e476b4c1544f46abe5db9b45c3ccd93f3

2C39B75EDCD294B0CAC1DECB4007285A35FDAE1D

Genes
yloB-yloC-remA-gmk-yloH
Description
PubMed
Regulation
expressed during sporulation in the mother cell PubMed
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yloB->yloH

2025-04-03 13:34:29

Jstuelk

150

b15c1f28629d3e15db14719be44c291dd5f28c5f

86CE620BD4E14CC259270F542702B302B7837CCD

Biological materials
Mutant
GP2609 (ΔyloC::cat), available in Jörg Stülke's lab
MGNA-B131 (yloC::erm), available at the NBRP B. subtilis, Japan
BKE15660 (yloC::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATTTTAAAACACCCAATTC,  downstream forward: _UP4_TAGTGACTGTGCGTATTGTT
BKK15660 (yloC::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATTTTAAAACACCCAATTC,  downstream forward: _UP4_TAGTGACTGTGCGTATTGTT
References
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A57D2C1536F3E93CD687C28C59FF297355CAB303

Page visits: 3107

Time of last update: 2025-04-12 13:28:55

Author of last update: Jstuelk