Difference between revisions of "Transporters/ other"

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* 1.2.1. [[ABC transporters]]
 
* 1.2.1. [[ABC transporters]]
 
* 1.2.2. [[Phosphotransferase systems]]
 
* 1.2.2. [[Phosphotransferase systems]]
−
* 1.2.3. [[Transporters/ other]]
+
* 1.2.3. [[ECF transporter]]
 +
* 1.2.4. [[Transporters/ other]]
 
|Related=
 
|Related=
−
none
+
* [[transport proteins]]
 +
* [[APC superfamily of transport proteins]]
 
|}}
 
|}}
 +
 +
== Important web site: [http://www.tcdb.org The transporter classification database] ==
 +
== Genes in this functional category ==
 +
 +
===Amino acid transporters ===
 +
==== solute:sodium symporter family ====
 +
* ''[[gltT]]''
 +
* ''[[opuE]]''
 +
* ''[[putP]]''
 +
* ''[[yodF]]''
 +
* ''[[ywcA]]''
 +
==== Other amino acid transporters ====
 +
* ''[[aapA]]''
 +
* ''[[azlC]]''
 +
* ''[[azlD]]''
 +
* ''[[bcaP]]''
 +
* ''[[braB]]''
 +
* ''[[brnQ]]''
 +
* ''[[cysP]]''
 +
* ''[[glnT]]''
 +
* ''[[gltP]]''
 +
 +
* ''[[hutM]]''
 +
* ''[[rocC]]''
 +
* ''[[rocE]]''
 +
* ''[[steT]]''
 +
* ''[[tcyP]]''
 +
* ''[[ybgF]]''
 +
* ''[[ybxG]]''
 +
* ''[[ydgF]]''
 +
* ''[[yrbD]]''
 +
* ''[[ytnA]]''
 +
* ''[[yvbW]]''
 +
* ''[[yveA]]''
 +
 +
===Peptide transporter===
 +
* ''[[dtpT]]''
 +
 +
===Carbohydrate transporter===
 +
* ''[[araE]]''
 +
* ''[[exuT]]''
 +
* ''[[glcP]]''
 +
* ''[[glcU]]''
 +
* ''[[glpF]]''
 +
* ''[[glpT]]''
 +
* ''[[gntP]]''
 +
* ''[[gutP]]''
 +
* ''[[iolF]]''
 +
* ''[[iolT]]''
 +
* ''[[kdgT]]''
 +
* ''[[mdtP]]''
 +
* ''[[xynP]]''
 +
* ''[[ycbE]]''
 +
* ''[[yfiG]]''
 +
* ''[[yjmB]]''
 +
 +
===Transporter for organic acids===
 +
* ''[[alsT]]''
 +
* ''[[cimH]]''
 +
* ''[[citH]]''
 +
* ''[[citM]]''
 +
* ''[[dctP]]''
 +
* ''[[gabP]]''
 +
* ''[[lctP]]''
 +
* ''[[lutP]]''
 +
* ''[[maeN]]''
 +
* ''[[mleN]]''
 +
* ''[[ybaR]]''
 +
* ''[[yflS]]''
 +
* ''[[yoaB]]''
 +
* ''[[yraO]]''
 +
* ''[[ysbA]]''
 +
 +
===Metal ion transporter===
 +
* ''[[arsB]]''
 +
* ''[[aseA]]''
 +
* ''[[cadA]]''
 +
* ''[[chaA]]''
 +
* ''[[copA]]''
 +
* ''[[copZ]]''
 +
* ''[[corA]]''
 +
* ''[[czcD]]''
 +
* [[EfeO]]-[[EfeU]]
 +
* [[KhtT]]-[[KhtU]]
 +
* [[KtrA]]-[[KtrB]]
 +
* [[KtrC]]-[[KtrD]]
 +
* ''[[mgtE]]''
 +
* ''[[mntH]]''
 +
* ''[[mrpA]]''
 +
* ''[[mrpB]]''
 +
* ''[[mrpC]]''
 +
* ''[[mrpD]]''
 +
* ''[[mrpE]]''
 +
* ''[[mrpF]]''
 +
* ''[[mrpG]]''
 +
* ''[[nhaC]]''
 +
* ''[[nhaK]]''
 +
* ''[[pfeT]]''
 +
* ''[[yciB]]''
 +
* ''[[ycnJ]]''
 +
* ''[[yfjQ]]''
 +
* ''[[yugO]]''
 +
===Nucleotide/ nucleoside transporter===
 +
* ''[[nupC]]''
 +
* ''[[nupG]]''
 +
* ''[[pbuE]]''
 +
* ''[[pbuG]]''
 +
* ''[[pbuO]]''
 +
* ''[[pbuX]]''
 +
* ''[[pucI]]''
 +
* ''[[pucJ]]''
 +
* ''[[pucK]]''
 +
* ''[[pyrP]]''
 +
 +
===Transporter for cofactors===
 +
* ''[[niaP]]''
 +
 +
=== Uptake of other small ions ===
 +
* ''[[nasA]]''
 +
* ''[[nrgA]]''
 +
* ''[[pit]]''
 +
*'' [[yqeW]]''
 +
 +
=== Uptake of compatible solutes ===
 +
* ''[[opuD]]''
 +
* ''[[opuE]]''
 +
 +
=== Siderophore exporters ===
 +
* ''[[ymfD]]''
 +
 +
=== Metal ion exporters ===
 +
* ''[[mneP]]''
 +
* ''[[mneS]]''
 +
 +
=== Multidrug exporters ===
 +
* ''[[ebrA]]''
 +
* ''[[ebrB]]''
 +
* ''[[yvaD]]''
 +
* ''[[yvaE]]''
 +
* ''[[yvdR]]''
 +
* ''[[yvdS]]''
 +
 +
=== Other exporters ===
 +
* ''[[blt]]''
 +
* ''[[bmr]]''
 +
* ''[[epsK]]''
 +
* ''[[mdr]]''
 +
* ''[[narK]]''
 +
* ''[[trkA]]''
 +
* ''[[ykkC]]''
 +
* ''[[ykkD]]''
 +
* ''[[ywrA]]''
 +
* ''[[ywrB]]''
 +
 +
===Other transporters===
 +
* ''[[csbC]]''
 +
* ''[[cstA]]''
 +
* ''[[dltB]]''
 +
* ''[[lmrB]]''
 +
* ''[[tetB]]''
 +
* ''[[ybaS]]''
 +
* ''[[ybcL]]''
 +
* ''[[ybeC]]''
 +
 +
* ''[[ycbK]]''
 +
 +
* ''[[yceJ]]''
 +
*'' [[ycgH]]''
 +
 +
* ''[[ycnB]]''
 +
* ''[[ycsG]]''
 +
* ''[[ydbO]]''
 +
* ''[[yddS]]''
 +
* ''[[ydeG]]''
 +
* ''[[ydeR]]''
 +
 +
* ''[[ydgH]]''
 +
* ''[[ydgK]]''
 +
 +
* ''[[yecA]]''
 +
* ''[[yfhI]]''
 +
* ''[[yfiS]]''
 +
* ''[[yfiU]]''
 +
* ''[[yfkF]]''
 +
* ''[[yfkL]]''
 +
* ''[[yflA]]''
 +
* ''[[yfmI]]''
 +
* ''[[yfmO]]''
 +
* ''[[yfnA]]''
 +
* ''[[yhcA]]''
 +
* ''[[yhdH]]''
 +
* ''[[yhjB]]''
 +
* ''[[yhjO]]''
 +
* ''[[yitG]]''
 +
* ''[[yitZ]]''
 +
* ''[[yjbB]]''
 +
* ''[[yjbQ]]''
 +
* ''[[ykuC]]''
 +
* ''[[yloB]]''
 +
* ''[[yncC]]''
 +
* ''[[yoaV]]''
 +
* ''[[yocN]]''
 +
* ''[[yocR]]''
 +
* ''[[yocS]]''
 +
 +
* ''[[yojA]]''
 +
* ''[[ypnP]]''
 +
* ''[[yqjV]]''
 +
* ''[[yrhG]]''
 +
* ''[[yrhP]]''
 +
* ''[[ytbD]]''
 +
 +
* ''[[ytoA]]''
 +
* ''[[yttB]]''
 +
* ''[[yubD]]''
 +
 +
* ''[[yutK]]''
 +
* ''[[yuxJ]]''
 +
 +
* ''[[yvbV]]''
 +
 +
* ''[[yvdB]]''
 +
* ''[[yvgK]]''
 +
* ''[[yvgT]]''
 +
* ''[[yvkA]]''
 +
* ''[[yvmA]]''
 +
* ''[[yvqJ]]''
 +
* ''[[yvsH]]''
 +
* ''[[ywcJ]]''
 +
* ''[[ywoD]]''
 +
* ''[[ywrK]]''
 +
* ''[[ywtG]]''
 +
* ''[[yxaH]]''
 +
* ''[[yxeR]]''
 +
* ''[[yxlA]]''
 +
* ''[[yxlH]]''
 +
* ''[[yybF]]''
 +
* ''[[yybO]]''
 +
* ''[[yycB]]''
 +
 
=Relevant publications=
 
=Relevant publications=
−
<pubmed> 20497229 </pubmed>
+
<pubmed> 20497229 11763970 15247498 10839820 12787345 10943556 9529885 24225317 </pubmed>
  
−
== Genes in this functional category ==
+
=Back to [[categories]]=
−
* [[aapA]]
 
−
* [[alsT]]
 
−
* [[araE]]
 
−
* [[arsB]]
 
−
* [[aseA]]
 
−
* [[azlC]]
 
−
* [[azlD]]
 
−
* [[bcaP]]
 
−
* [[blt]]
 
−
* [[bmr]]
 
−
* [[braB]]
 
−
* [[brnQ]]
 
−
* [[cadA]]
 
−
* [[chaA]]
 
−
* [[cimH]]
 
−
* [[citH]]
 
−
* [[citM]]
 
−
* [[copA]]
 
−
* [[copZ]]
 
−
* [[corA]]
 
−
* [[csbC]]
 
−
* [[cysP]]
 
−
* [[czcD]]
 
−
* [[dctB]]
 
−
* [[dctP]]
 
−
* [[dltB]]
 
−
* [[ebrA]]
 
−
* [[ebrB]]
 
−
* [[exuT]]
 
−
* [[gabP]]
 
−
* [[glcP]]
 
−
* [[glcU]]
 
−
* [[glnT]]
 
−
* [[glpF]]
 
−
* [[glpT]]
 
−
* [[gltP]]
 
−
* [[gltT]]
 
−
* [[gntP]]
 
−
* [[gutP]]
 
−
* [[hutM]]
 
−
* [[iolF]]
 
−
* [[iolT]]
 
−
* [[kdgT]]
 
−
* [[ktrA]]
 
−
* [[ktrB]]
 
−
* [[ktrC]]
 
−
* [[ktrD]]
 
−
* [[lctP]]
 
−
* [[lmrB]]
 
−
* [[lutP]]
 
−
* [[maeN]]
 
−
* [[mdr]]
 
−
* [[mdtP]]
 
−
* [[mgtE]]
 
−
* [[mleN]]
 
−
* [[mntH]]
 
−
* [[mrpA]]
 
−
* [[mrpB]]
 
−
* [[mrpC]]
 
−
* [[mrpD]]
 
−
* [[mrpE]]
 
−
* [[mrpF]]
 
−
* [[mrpG]]
 
−
* [[narK]]
 
−
* [[nasA]]
 
−
* [[nhaC]]
 
−
* [[nhaK]]
 
−
* [[nrgA]]
 
−
* [[nupC]]
 
−
* [[nupG]]
 
−
* [[opuD]]
 
−
* [[opuE]]
 
−
* [[pbuE]]
 
−
* [[pbuG]]
 
−
* [[pbuO]]
 
−
* [[pbuX]]
 
−
* [[pit]]
 
−
* [[pucI]]
 
−
* [[pucJ]]
 
−
* [[pucK]]
 
−
* [[pyrP]]
 
−
* [[ribU]]
 
−
* [[rocC]]
 
−
* [[rocE]]
 
−
* [[steT]]
 
−
* [[tcyP]]
 
−
* [[tetB]]
 
−
* [[thiT]]
 
−
* [[trkA]]
 
−
* [[trpP]]
 
−
* [[ybaS]]
 
−
* [[ybcL]]
 
−
* [[ybeC]]
 
−
* [[ybgF]]
 
−
* [[ybxG]]
 
−
* [[ycbE]]
 
−
* [[ycbK]]
 
−
* [[yccK]]
 
−
* [[yceI]]
 
−
* [[yceJ]]
 
−
* [[ycgH]]
 
−
* [[ycgO]]
 
−
* [[yciB]]
 
−
* [[yclF]]
 
−
* [[ycnB]]
 
−
* [[ycnJ]]
 
−
* [[ycsG]]
 
−
* [[ydbO]]
 
−
* [[yddS]]
 
−
* [[ydeG]]
 
−
* [[ydeR]]
 
−
* [[ydfM]]
 
−
* [[ydgF]]
 
−
* [[ydgH]]
 
−
* [[ydgK]]
 
−
* [[yeaB]]
 
−
* [[yecA]]
 
−
* [[yfhI]]
 
−
* [[yfiG]]
 
−
* [[yfiS]]
 
−
* [[yfiU]]
 
−
* [[yfjQ]]
 
−
* [[yfkF]]
 
−
* [[yfkL]]
 
−
* [[yflA]]
 
−
* [[yflS]]
 
−
* [[yfmI]]
 
−
* [[yfmO]]
 
−
* [[yfnA]]
 
−
* [[yhaT]]
 
−
* [[yhaU]]
 
−
* [[yhcA]]
 
−
* [[yhdG]]
 
−
* [[yhdH]]
 
−
* [[yhjB]]
 
−
* [[yhjO]]
 
−
* [[yitG]]
 
−
* [[yitZ]]
 
−
* [[yjbB]]
 
−
* [[yjbQ]]
 
−
* [[yjmB]]
 
−
* [[ykuC]]
 
−
* [[yloB]]
 
−
* [[ymfD]]
 
−
* [[yncC]]
 
−
* [[yoaB]]
 
−
* [[yoaV]]
 
−
* [[yocN]]
 
−
* [[yocR]]
 
−
* [[yocS]]
 
−
* [[yodF]]
 
−
* [[yojA]]
 
−
* [[ypnP]]
 
−
* [[yqeW]]
 
−
* [[yqjV]]
 
−
* [[yraO]]
 
−
* [[yrbD]]
 
−
* [[yrhG]]
 
−
* [[yrhP]]
 
−
* [[ytbD]]
 
−
* [[ytnA]]
 
−
* [[ytoA]]
 
−
* [[yttB]]
 
−
* [[yubD]]
 
−
* [[yugO]]
 
−
* [[yutK]]
 
−
* [[yuxJ]]
 
−
* [[yvaE]]
 
−
* [[yvbV]]
 
−
* [[yvbW]]
 
−
* [[yvdB]]
 
−
* [[yveA]]
 
−
* [[yvgK]]
 
−
* [[yvkA]]
 
−
* [[yvmA]]
 
−
* [[yvqJ]]
 
−
* [[yvsH]]
 
−
* [[ywbL]]
 
−
* [[ywbM]]
 
−
* [[ywbN]]
 
−
* [[ywcA]]
 
−
* [[ywcJ]]
 
−
* [[ywoD]]
 
−
* [[ywrB]]
 
−
* [[ywrK]]
 
−
* [[ywtG]]
 
−
* [[yxaH]]
 
−
* [[yxeR]]
 
−
* [[yxlA]]
 
−
* [[yxlH]]
 
−
* [[yybF]]
 
−
* [[yybO]]
 
−
* [[yycB]]
 
−
* [[zosA]]
 

Latest revision as of 08:56, 22 December 2016

Parent categories
Neighbouring categories
Related categories

Important web site: The transporter classification database

Genes in this functional category

Amino acid transporters

solute:sodium symporter family

Other amino acid transporters

Peptide transporter

Carbohydrate transporter

Transporter for organic acids

Metal ion transporter

Nucleotide/ nucleoside transporter

Transporter for cofactors

Uptake of other small ions

Uptake of compatible solutes

Siderophore exporters

Metal ion exporters

Multidrug exporters

Other exporters

Other transporters

Relevant publications

Milton H Saier, Vamsee S Reddy, Dorjee G Tamang, Ake Västermark
The transporter classification database.
Nucleic Acids Res: 2014, 42(Database issue);D251-8
[PubMed:24225317] [WorldCat.org] [DOI] (I p)

Thomas Eitinger, Dmitry A Rodionov, Mathias Grote, Erwin Schneider
Canonical and ECF-type ATP-binding cassette importers in prokaryotes: diversity in modular organization and cellular functions.
FEMS Microbiol Rev: 2011, 35(1);3-67
[PubMed:20497229] [WorldCat.org] [DOI] (I p)

Wolfgang Busch, Milton H Saier, International Union of Biochemistry and Molecular Biology (IUBMB)
The IUBMB-endorsed transporter classification system.
Mol Biotechnol: 2004, 27(3);253-62
[PubMed:15247498] [WorldCat.org] [DOI] (P p)

Milton H Saier
Tracing pathways of transport protein evolution.
Mol Microbiol: 2003, 48(5);1145-56
[PubMed:12787345] [WorldCat.org] [DOI] (P p)

Milton H Saier, Seth R Goldman, Randal R Maile, Matthew S Moreno, Walter Weyler, Nelson Yang, Ian T Paulsen
Transport capabilities encoded within the Bacillus subtilis genome.
J Mol Microbiol Biotechnol: 2002, 4(1);37-67
[PubMed:11763970] [WorldCat.org] (P p)

M H Saier, J T Beatty, A Goffeau, K T Harley, W H Heijne, S C Huang, D L Jack, P S Jähn, K Lew, J Liu, S S Pao, I T Paulsen, T T Tseng, P S Virk
The major facilitator superfamily.
J Mol Microbiol Biotechnol: 1999, 1(2);257-79
[PubMed:10943556] [WorldCat.org] (P p)

M H Saier
A functional-phylogenetic classification system for transmembrane solute transporters.
Microbiol Mol Biol Rev: 2000, 64(2);354-411
[PubMed:10839820] [WorldCat.org] [DOI] (P p)

S S Pao, I T Paulsen, M H Saier
Major facilitator superfamily.
Microbiol Mol Biol Rev: 1998, 62(1);1-34
[PubMed:9529885] [WorldCat.org] [DOI] (P p)


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