Difference between revisions of "Biosynthesis/ acquisition of amino acids"

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(Created page with " {{CategoryTree |Parents= * 2. Metabolism ** 2.3. Amino acid/ nitrogen metabolism |Neighbours= * 2.3.1. Biosynthesis/ acquisition of amino acids * 2.3.2. [[Utilizatio...")
 
(→‎Biosynthesis/ acquisition of serine/ glycine/ alanine)
 
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{{CategoryTree
 
{{CategoryTree
 
|Parents=
 
|Parents=
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* 2.3.4. [[Putative amino acid transporter]]
 
* 2.3.4. [[Putative amino acid transporter]]
 
|Related=
 
|Related=
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none
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* [[T-box]]
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* [[CodY regulon]]
 
|}}
 
|}}
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== Genes in this functional category ==
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 +
=== Biosynthesis/ acquisition of glutamate/ glutamine/ ammonium assimilation ===
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* [[glnA]]
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* [[glnH]]
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* [[glnK]]
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* [[glnL]]
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* [[glnM]]
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* [[glnP]]
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* [[glnQ]]
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* [[glnR]]
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* [[glnT]]
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* [[gltA]]
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* [[gltB]]
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* [[gltC]]
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* [[gltT]]
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* [[nrgA]]
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* [[nrgB]]
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* [[tnrA]]
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=== Biosynthesis/ acquisition of proline ===
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* ''[[proA]]''
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* ''[[proB]]''
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* ''[[proG]]''
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* ''[[proH]]''
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* ''[[proI]]''
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* ''[[proJ]]''
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* ''[[putP]]''
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* ''[[gabP]]''
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=== Biosynthesis/ acquisition of proline/ based on similarity ===
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* [[ytnA]]
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=== Biosynthesis/ acquisition of arginine ===
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* [[Sr1]]
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* [[ahrC]]
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* [[argB]]
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* [[argC]]
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* [[argD]]
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* [[argF]]
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* [[argG]]
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* [[argH]]
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* [[argJ]]
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* [[artP]]
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* [[artQ]]
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* [[artR]]
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* [[carA]]
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* [[carB]]
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* [[rocC]]
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* [[rocE]]
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=== Biosynthesis/ acquisition of aspartate/ asparagine ===
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* [[asnB]]
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* [[asnH]]
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* [[asnO]]
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* [[aspB]]
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* [[yveA]]
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=== Biosynthesis/ acquisition of lysine/ threonine ===
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* ''[[asd]]''
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* ''[[dapA]]''
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* ''[[dapB]]''
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* ''[[dapF]]''
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* ''[[dapG]]''
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* ''[[dapI]]''
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* ''[[hom]]''
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* ''[[lysA]]''
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* ''[[lysC]]''
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* ''[[patA]]''
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* ''[[thrB]]''
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* ''[[thrC]]''
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* ''[[thrD]]''
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* ''[[thrR]]''
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* ''[[ykuQ]]''
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* ''[[yvsH]]''
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=== Biosynthesis/ acquisition of lysine/ threonine/ based on similarity ===
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* [[ytjP]]
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=== Biosynthesis/ acquisition of serine/ glycine/ alanine ===
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* [[glyA]]
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* [[serA]]
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* [[serB]]
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* [[serC]]
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* [[yrbD]]
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=== Biosynthesis/ acquisition of cysteine ===
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* [[CysE]]
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* [[CysK]]
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* [[MccA]]
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* [[MccB]]
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* [[TcyJ]], [[TcyK]], [[TcyL]], [[TcyM]], [[TcyN]]: uptake of cystine
 +
* [[TcyA]], [[TcyB]], [[TcyC]]: uptake of cystine
 +
* [[TcyP]]: uptake of cystine
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* [[YxeM]]-[[YxeN]]-[[YxeO]]: uptake of cysteine (putative)
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* [[YtlI]]
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 +
=== Biosynthesis/ acquisition of methionine/ s-adenosylmethionine ===
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*'' [[hom]]''
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* ''[[luxS]]''
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* ''[[metA]]''
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* ''[[metC]]''
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* ''[[metE]]''
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* ''[[metI]]''
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* ''[[metK]]''
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* ''[[metN]]''
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* ''[[metP]]''
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* ''[[metQ]]''
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*'' [[mtnA]]''
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*'' [[mtnB]]''
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* ''[[mtnD]]''
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* ''[[mtnE]]''
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* ''[[mtnK]]''
 +
* ''[[mtnN]]''
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* ''[[mtnU]]''
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* ''[[mtnW]]''
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* ''[[mtnX]]''
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* ''[[patB]]''
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 +
=== Biosynthesis/ acquisition of methionine/ s-adenosylmethionine/ based on similarity ===
 +
* ''[[yitJ]]''
 +
* ''[[yoaD]]''
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* ''[[yxjG]]''
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* ''[[yxjH]]''
 +
 +
=== Biosynthesis/ acquisition of branched-chain amino acids ===
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* [[azlB]]
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* [[azlC]]
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* [[azlD]]
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* [[bcaP]]
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* [[braB]]
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* [[brnQ]]
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* [[ilvA]]
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* [[ilvB]]
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* [[ilvC]]
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* [[ilvD]]
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* [[ilvH]]
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* [[leuA]]
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* [[leuB]]
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* [[leuC]]
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* [[leuD]]
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* [[ybgE]]
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* [[ywaA]]
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=== Biosynthesis/ acquisition of aromatic amino acids ===
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* [[aroA]]
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* [[aroB]]
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* [[aroC]]
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* [[aroD]]
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* [[aroE]]
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* [[aroF]]
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* [[aroH]]
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* [[aroK]]
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* [[hisC]]
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* [[mtrB]]
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* [[pabA]]
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* [[pheA]]
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* [[rtpA]]
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* [[trpA]]
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* [[trpB]]
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* [[trpC]]
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* [[trpD]]
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* [[trpE]]
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* [[trpF]]
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* [[trpP]]
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* [[tyrA]]
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=== Biosynthesis/ acquisition of histidine ===
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* [[hisA]]
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* [[hisB]]
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* [[hisD]]
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* [[hisF]]
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* [[hisG]]
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* [[hisH]]
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* [[hisI]]
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* [[hisJ]]
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* [[hutM]]
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* [[prs]]
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* [[ybgF]]
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== Important publications ==
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<pubmed>24163341 </pubmed>
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=Back to [[categories]]=

Latest revision as of 18:27, 15 February 2017

Parent categories
Neighbouring categories
Related categories

Genes in this functional category

Biosynthesis/ acquisition of glutamate/ glutamine/ ammonium assimilation

Biosynthesis/ acquisition of proline

Biosynthesis/ acquisition of proline/ based on similarity

Biosynthesis/ acquisition of arginine

Biosynthesis/ acquisition of aspartate/ asparagine

Biosynthesis/ acquisition of lysine/ threonine

Biosynthesis/ acquisition of lysine/ threonine/ based on similarity

Biosynthesis/ acquisition of serine/ glycine/ alanine

Biosynthesis/ acquisition of cysteine

Biosynthesis/ acquisition of methionine/ s-adenosylmethionine

Biosynthesis/ acquisition of methionine/ s-adenosylmethionine/ based on similarity

Biosynthesis/ acquisition of branched-chain amino acids

Biosynthesis/ acquisition of aromatic amino acids

Biosynthesis/ acquisition of histidine

Important publications

Allison Kriel, Shaun R Brinsmade, Jessica L Tse, Ashley K Tehranchi, Alycia N Bittner, Abraham L Sonenshein, Jue D Wang
GTP dysregulation in Bacillus subtilis cells lacking (p)ppGpp results in phenotypic amino acid auxotrophy and failure to adapt to nutrient downshift and regulate biosynthesis genes.
J Bacteriol: 2014, 196(1);189-201
[PubMed:24163341] [WorldCat.org] [DOI] (I p)

Back to categories

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