Latest revision as of 09:13, 22 December 2016

Overview on the regulons in B. subtilis

Sigma factors

SigB regulon, see also SigB
SigD regulon, see also SigD
SigE regulon, see also SigE
SigF regulon, see also SigF
SigG regulon, see also SigG
SigH regulon, see also SigH
SigI regulon, see also SigI
SigK regulon, see also SigK
SigL regulon, see also SigL
SigM regulon, see also SigM
SigV regulon, see also SigV
SigW regulon, see also SigW
SigX regulon, see also SigX
SigY regulon, see also SigY
Xpf regulon, see also Xpf
YlaC regulon, see also YlaC
SigO-RsoA regulon, see also SigO and RsoA

DNA-binding regulators

Abh regulon, see also Abh
AbrB regulon, see also AbrB
AcoR regulon, see also AcoR
AdaA regulon, see also AdaA
AdeR regulon, see also AdeR
AdhR regulon, see also AdhR
AhrC regulon, see also AhrC
AlsR regulon, see also AlsR
AnsR regulon, see also AnsR
AraR regulon, see also AraR
ArsR regulon, see also ArsR
AscR regulon, see also AscR
AseR regulon, see also AseR
AzlB regulon, see also AzlB
BceR regulon, see also BceR
BirA regulon, see also BirA
BkdR regulon, see also BkdR
BltR regulon, see also BltR
BmrR regulon, see also BmrR
BsdA regulon, see also BsdA
Btr regulon, see also Btr
CatR regulon, see also CatR
CcpA regulon, see also CcpA
CcpC regulon, see also CcpC
CcpN regulon, see also CcpN
CggR regulon, see also CggR
ChrS regulon, see also ChrS
CitR regulon, see also CitR
CitT regulon, see also CitT
CodY regulon, see also CodY
ComA regulon, see also ComA
ComK regulon, see also ComK
CsoR regulon, see also CsoR
CssR regulon, see also CssR
CtsR regulon, see also CtsR
CymR regulon, see also CymR
CysL regulon, see also CysL
CzrA regulon, see also CzrA
DegU regulon, see also DegU
DeoR regulon, see also DeoR
DesR regulon, see also DesR
DnaA regulon, see also DnaA
DtrR regulon, see also DtrR
ExuR regulon, see also ExuR
FadR regulon, see also FadR
FapR regulon, see also FapR
FatR regulon, see also FatR
Fnr regulon, see also Fnr
FrlR regulon, see also FrlR
FruR regulon, see also FruR
Fur regulon, see also Fur
GabR regulon, see also GabR
GamR regulon, see also GamR
GbsR regulon, see also GbsR
GerE regulon, see also GerE
GerR regulon, see also GerR
GlnL regulon, see also GlnL
GlnR regulon, see also GlnR
GltC regulon, see also GltC
GltR regulon, see also GltR
GlvR regulon, see also GlvR
GmuR regulon, see also GmuR
GntR regulon, see also GntR
GutR regulon, see also GutR
HrcA regulon, see also HrcA
HxlR regulon, see also HxlR
HypR regulon, see also HypR
ImmR regulon, see also ImmR
IolR regulon, see also IolR
KdgR regulon, see also KdgR
KipR regulon, see also KipR
LacR regulon, see also LacR
LevR regulon, see also LevR
LexA regulon, see also LexA
LiaR regulon, see also LiaR
LicR regulon, see also LicR
LmrA regulon, see also LmrA
LutR regulon, see also LutR
LytT regulon, see also LytT
MalR regulon, see also MalR
ManR regulon, see also ManR
MdtR regulon, see also MdtR
MgsR regulon, see also MgsR
MhqR regulon, see also MhqR
MntR regulon, see also MntR
Mta regulon, see also Mta
MtlR regulon, see also MtlR
NadR regulon, see also NadR
NagR regulon, see also NagR
NatR regulon, see also NatR
NrdR regulon, see also NrdR
NsrR regulon, see also NsrR
NtdR regulon, see also NtdR
OhrR regulon, see also OhrR
OpcR regulon, see also OpcR
PadR regulon, see also PadR
PchR regulon, see also YvmB
PerR regulon, see also PerR
PhoP regulon, see also PhoP
PsdR regulon, see also PsdR
PucR regulon, see also PucR
PurR regulon, see also PurR
PutR regulon, see also PutR
QdoR regulon, see also QdoR
RemA regulon, see also RemA
ResD regulon, see also ResD
Rex regulon, see also Rex
RghR regulon, see also RghR
RhaR regulon, see also RhaR
RhgR regulon, see also RhgR
RocR regulon, see also RocR
Rok regulon, see also Rok
RsfA regulon, see also RsfA
SalA regulon, see also SalA
ScoC regulon, see also ScoC
SdpR regulon, see also SdpR
SenS regulon, see also SenS
SinR regulon, see also SinR
SknR regulon, see also SknR
SlrR regulon, see also SlrR
Spo0A regulon, see also Spo0A
SpoIIID regulon, see also SpoIIID
SpoVT regulon, see also SpoVT
Spx regulon, see also Spx
TilS-HprT regulon, see also TilS, HprT
ThrR regulon, see also ThrR
TnrA regulon, see also TnrA
TreR regulon, see also TreR
WalR regulon, see also WalR
Xre regulon, see also Xre
XylR regulon, see also XylR

YcbG regulon, see also YcbG
YclJ regulon, see also YclJ
YcnK regulon, see also YcnK
YdfI regulon, see also YdfI

YetL regulon, see also YetL
YfhP regulon, see also YfhP
YfiK regulon, see also YfiK
YfmP regulon, see also YfmP
YkrK regulon, see also YkrK
YodB regulon, see also YodB
YofA regulon, see also YofA
YrkP regulon, see also YrkP
YtrA regulon, see also YtrA
YvrHb regulon, see also YvrHb
YwbI regulon, see also YwbI
YwcC regulon, see also YwcC
YxdJ regulon, see also YxdJ
Zur regulon, see also Zur

RNA switches

RNases

Additional regulatory mechanisms

BmrB regulon, see also BmrB
CitB regulon, see also CitB
ComN regulon, see also ComN
CsrA regulon, see also CsrA
FbpB regulon, see also FbpB
fsrA regulon, see also fsrA
Kre regulon, see also Kre
MifM regulon, see also MifM
as-bsrH regulon, see also as-bsrH
as-yonT regulon, see also as-yonT
ratA regulon, see also ratA
RoxS regulon, see also RoxS
SR1 regulon, see also sr1
Stringent response

Key publications

@@ Line 19: / Line 19: @@
 * [[Xpf regulon]], see also [[Xpf]]
 * [[YlaC regulon]], see also [[YlaC]]
-* [[YvrI-YvrHa regulon]], see also [[YvrI]] and [[YvrHa]]
+* [[SigO-RsoA regulon]], see also [[SigO]] and [[RsoA]]
 = DNA-binding regulators =
@@ Line 101: / Line 101: @@
 * [[LmrA regulon]], see also [[LmrA]]
 * [[LutR regulon]], see also [[LutR]]
+* [[LytT regulon]], see also [[LytT]]
 * [[MalR regulon]], see also [[MalR]]
 * [[ManR regulon]], see also [[ManR]]
@@ Line 112: / Line 113: @@
 * [[NagR regulon]], see also [[NagR]]
 * [[NatR regulon]], see also [[NatR]]
+* [[NrdR regulon]], see also [[NrdR]]
 * [[NsrR regulon]], see also [[NsrR]]
 * [[NtdR regulon]], see also [[NtdR]]
@@ Line 117: / Line 119: @@
 * [[OpcR regulon]], see also [[OpcR]]
 * [[PadR regulon]], see also [[PadR]]
+* [[PchR regulon]], see also [[YvmB]]
 * [[PerR regulon]], see also [[PerR]]
 * [[PhoP regulon]], see also [[PhoP]]
@@ Line 128: / Line 131: @@
 * [[Rex regulon]], see also [[Rex]]
 * [[RghR regulon]], see also [[RghR]]
+* [[RhaR regulon]], see also [[RhaR]]
 * [[RhgR regulon]], see also [[RhgR]]
 * [[RocR regulon]], see also [[RocR]]
@@ Line 144: / Line 148: @@
 * [[Spx regulon]], see also [[Spx]]
 * [[TilS-HprT regulon]], see also [[TilS]], [[HprT]]
+* [[ThrR regulon]], see also [[ThrR]]
 * [[TnrA regulon]], see also [[TnrA]]
 * [[TreR regulon]], see also [[TreR]]
@@ Line 157: / Line 162: @@
 * [[YetL regulon]], see also [[YetL]]
 * [[YfhP regulon]], see also [[YfhP]]
+* [[YfiK regulon]], see also [[YfiK]]
 * [[YfmP regulon]], see also [[YfmP]]
 * [[YkrK regulon]], see also [[YkrK]]
@@ Line 164: / Line 170: @@
 * [[YtrA regulon]], see also [[YtrA]]
 * [[YvrHb regulon]], see also [[YvrHb]]
+* [[YwbI regulon]], see also [[YwbI]]
 * [[YwcC regulon]], see also [[YwcC]]
 * [[YxdJ regulon]], see also [[YxdJ]]
@@ Line 171: / Line 178: @@
 * [[A-box]]
+* [[B12 riboswitch]]
 * [[EAR riboswitch]]
 * [[FMN-box]]
@@ Line 192: / Line 200: @@
 * [[TRAP regulon]], see also [[MtrB]]
 * [[YdaO riboswitch]]
+* [[YkkC riboswitch]]
 * [[yybP-ykoY motif]]
 * [[RNA switch/ other]]
+= [[RNases]] =
+* [[RNase III targets]]
+* [[RNase Y targets]]
 = Additional regulatory mechanisms =
@@ Line 202: / Line 215: @@
 * [[FbpB regulon]], see also ''[[FbpB]]''
 * [[fsrA regulon]], see also ''[[fsrA]]''
+* [[Kre regulon]], see also [[Kre]]
 * [[MifM regulon]], see also [[MifM]]
 * [[as-bsrH regulon]], see also ''[[as-bsrH]]''