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Overview on the regulons in ''B. subtilis'' | Overview on the regulons in ''B. subtilis'' | ||
= [[Sigma factors]] = | |||
* [[SigB regulon]], see also [[SigB]] | |||
* [[SigD regulon]], see also [[SigD]] | |||
* [[SigE regulon]], see also [[SigE]] | |||
* [[SigF regulon]], see also [[SigF]] | |||
* [[SigG regulon]], see also [[SigG]] | |||
* [[SigH regulon]], see also [[SigH]] | |||
* [[SigI regulon]], see also [[SigI]] | |||
* [[SigK regulon]], see also [[SigK]] | |||
* [[SigL regulon]], see also [[SigL]] | |||
* [[SigM regulon]], see also [[SigM]] | |||
* [[SigV regulon]], see also [[SigV]] | |||
* [[SigW regulon]], see also [[SigW]] | |||
* [[SigX regulon]], see also [[SigX]] | |||
* [[SigY regulon]], see also [[SigY]] | |||
* [[Xpf regulon]], see also [[Xpf]] | |||
* [[YlaC regulon]], see also [[YlaC]] | |||
* [[SigO-RsoA regulon]], see also [[SigO]] and [[RsoA]] | |||
= DNA-binding regulators = | |||
* [[Abh regulon]], see also [[Abh]] | |||
* [[AbrB regulon]], see also [[AbrB]] | |||
* [[AcoR regulon]], see also [[AcoR]] | |||
* [[AdaA regulon]], see also [[AdaA]] | |||
* [[AdeR regulon]], see also [[AdeR]] | |||
* [[AdhR regulon]], see also [[AdhR]] | |||
* [[AhrC regulon]], see also [[AhrC]] | |||
* [[AlsR regulon]], see also [[AlsR]] | |||
* [[AnsR regulon]], see also [[AnsR]] | |||
* [[AraR regulon]], see also [[AraR]] | |||
* [[ArsR regulon]], see also [[ArsR]] | |||
* [[AscR regulon]], see also [[AscR]] | |||
* [[AseR regulon]], see also [[AseR]] | |||
* [[AzlB regulon]], see also [[AzlB]] | |||
* [[BceR regulon]], see also [[BceR]] | |||
* [[BirA regulon]], see also [[BirA]] | |||
* [[BkdR regulon]], see also [[BkdR]] | |||
* [[BltR regulon]], see also [[BltR]] | |||
* [[BmrR regulon]], see also [[BmrR]] | |||
* [[BsdA regulon]], see also [[BsdA]] | |||
* [[Btr regulon]], see also [[Btr]] | |||
* [[CatR regulon]], see also [[CatR]] | |||
* [[CcpA regulon]], see also [[CcpA]] | |||
* [[CcpC regulon]], see also [[CcpC]] | |||
* [[CcpN regulon]], see also [[CcpN]] | |||
* [[CggR regulon]], see also [[CggR]] | |||
* [[ChrS regulon]], see also [[ChrS]] | |||
* [[CitR regulon]], see also [[CitR]] | |||
* [[CitT regulon]], see also [[CitT]] | |||
* [[CodY regulon]], see also [[CodY]] | |||
* [[ComA regulon]], see also [[ComA]] | |||
* [[ComK regulon]], see also [[ComK]] | |||
* [[CsoR regulon]], see also [[CsoR]] | |||
* [[CssR regulon]], see also [[CssR]] | |||
* [[CtsR regulon]], see also [[CtsR]] | |||
* [[CymR regulon]], see also [[CymR]] | |||
* [[CysL regulon]], see also [[CysL]] | |||
* [[CzrA regulon]], see also [[CzrA]] | |||
* [[DegU regulon]], see also [[DegU]] | |||
* [[DeoR regulon]], see also [[DeoR]] | |||
* [[DesR regulon]], see also [[DesR]] | |||
* [[DnaA regulon]], see also [[DnaA]] | |||
* [[DtrR regulon]], see also [[DtrR]] | |||
* [[ExuR regulon]], see also [[ExuR]] | |||
* [[FadR regulon]], see also [[FadR]] | |||
* [[FapR regulon]], see also [[FapR]] | |||
* [[FatR regulon]], see also [[FatR]] | |||
* [[Fnr regulon]], see also [[Fnr]] | |||
* [[FrlR regulon]], see also [[FrlR]] | |||
* [[FruR regulon]], see also [[FruR]] | |||
* [[Fur regulon]], see also [[Fur]] | |||
* [[GabR regulon]], see also [[GabR]] | |||
* [[GamR regulon]], see also [[GamR]] | |||
* [[GbsR regulon]], see also [[GbsR]] | |||
* [[GerE regulon]], see also [[GerE]] | |||
* [[GerR regulon]], see also [[GerR]] | |||
* [[GlnL regulon]], see also [[GlnL]] | |||
* [[GlnR regulon]], see also [[GlnR]] | |||
* [[GltC regulon]], see also [[GltC]] | |||
* [[GltR regulon]], see also [[GltR]] | |||
* [[GlvR regulon]], see also [[GlvR]] | |||
* [[GmuR regulon]], see also [[GmuR]] | |||
* [[GntR regulon]], see also [[GntR]] | |||
* [[GutR regulon]], see also [[GutR]] | |||
* [[HrcA regulon]], see also [[HrcA]] | |||
* [[HxlR regulon]], see also [[HxlR]] | |||
* [[HypR regulon]], see also [[HypR]] | |||
* [[ImmR regulon]], see also [[ImmR]] | |||
* [[IolR regulon]], see also [[IolR]] | |||
* [[KdgR regulon]], see also [[KdgR]] | |||
* [[KipR regulon]], see also [[KipR]] | |||
* [[LacR regulon]], see also [[LacR]] | |||
* [[LevR regulon]], see also [[LevR]] | |||
* [[LexA regulon]], see also [[LexA]] | |||
* [[LiaR regulon]], see also [[LiaR]] | |||
* [[LicR regulon]], see also [[LicR]] | |||
* [[LmrA regulon]], see also [[LmrA]] | |||
* [[LutR regulon]], see also [[LutR]] | |||
* [[LytT regulon]], see also [[LytT]] | |||
* [[MalR regulon]], see also [[MalR]] | |||
* [[ManR regulon]], see also [[ManR]] | |||
* [[MdtR regulon]], see also [[MdtR]] | |||
* [[MgsR regulon]], see also [[MgsR]] | |||
* [[MhqR regulon]], see also [[MhqR]] | |||
* [[MntR regulon]], see also [[MntR]] | |||
* [[Mta regulon]], see also [[Mta]] | |||
* [[MtlR regulon]], see also [[MtlR]] | |||
* [[NadR regulon]], see also [[NadR]] | |||
* [[NagR regulon]], see also [[NagR]] | |||
* [[NatR regulon]], see also [[NatR]] | |||
* [[NrdR regulon]], see also [[NrdR]] | |||
* [[NsrR regulon]], see also [[NsrR]] | |||
* [[NtdR regulon]], see also [[NtdR]] | |||
* [[OhrR regulon]], see also [[OhrR]] | |||
* [[OpcR regulon]], see also [[OpcR]] | |||
* [[PadR regulon]], see also [[PadR]] | |||
* [[PchR regulon]], see also [[YvmB]] | |||
* [[PerR regulon]], see also [[PerR]] | |||
* [[PhoP regulon]], see also [[PhoP]] | |||
* [[PsdR regulon]], see also [[PsdR]] | |||
* [[PucR regulon]], see also [[PucR]] | |||
* [[PurR regulon]], see also [[PurR]] | |||
* [[PutR regulon]], see also [[PutR]] | |||
* [[QdoR regulon]], see also [[QdoR]] | |||
* [[RemA regulon]], see also [[RemA]] | |||
* [[ResD regulon]], see also [[ResD]] | |||
* [[Rex regulon]], see also [[Rex]] | |||
* [[RghR regulon]], see also [[RghR]] | |||
* [[RhaR regulon]], see also [[RhaR]] | |||
* [[RhgR regulon]], see also [[RhgR]] | |||
* [[RocR regulon]], see also [[RocR]] | |||
* [[Rok regulon]], see also [[Rok]] | |||
* [[RsfA regulon]], see also [[RsfA]] | |||
* [[SalA regulon]], see also [[SalA]] | |||
* [[ScoC regulon]], see also [[ScoC]] | |||
* [[SdpR regulon]], see also [[SdpR]] | |||
* [[SenS regulon]], see also [[SenS]] | |||
* [[SinR regulon]], see also [[SinR]] | |||
* [[SknR regulon]], see also [[SknR]] | |||
* [[SlrR regulon]], see also [[SlrR]] | |||
* [[Spo0A regulon]], see also [[Spo0A]] | |||
* [[SpoIIID regulon]], see also [[SpoIIID]] | |||
* [[SpoVT regulon]], see also [[SpoVT]] | |||
* [[Spx regulon]], see also [[Spx]] | |||
* [[TilS-HprT regulon]], see also [[TilS]], [[HprT]] | |||
* [[ThrR regulon]], see also [[ThrR]] | |||
* [[TnrA regulon]], see also [[TnrA]] | |||
* [[TreR regulon]], see also [[TreR]] | |||
* [[WalR regulon]], see also [[WalR]] | |||
* [[Xre regulon]], see also [[Xre]] | |||
* [[XylR regulon]], see also [[XylR]] | |||
* [[YcbG regulon]], see also [[YcbG]] | |||
* [[YclJ regulon]], see also [[YclJ]] | |||
* [[YcnK regulon]], see also [[YcnK]] | |||
* [[YdfI regulon]], see also [[YdfI]] | |||
* [[YetL regulon]], see also [[YetL]] | |||
* [[YfhP regulon]], see also [[YfhP]] | |||
* [[YfiK regulon]], see also [[YfiK]] | |||
* [[YfmP regulon]], see also [[YfmP]] | |||
* [[YkrK regulon]], see also [[YkrK]] | |||
* [[YodB regulon]], see also [[YodB]] | |||
* [[YofA regulon]], see also [[YofA]] | |||
* [[YrkP regulon]], see also [[YrkP]] | |||
* [[YtrA regulon]], see also [[YtrA]] | |||
* [[YvrHb regulon]], see also [[YvrHb]] | |||
* [[YwbI regulon]], see also [[YwbI]] | |||
* [[YwcC regulon]], see also [[YwcC]] | |||
* [[YxdJ regulon]], see also [[YxdJ]] | |||
* [[Zur regulon]], see also [[Zur]] | |||
= [[RNA switch|RNA switches]] = | |||
* [[A-box]] | |||
* [[B12 riboswitch]] | |||
* [[EAR riboswitch]] | |||
* [[FMN-box]] | |||
* [[G-box]] | |||
* [[GlcT regulon]], see also [[GlcT]] | |||
* [[glmS ribozyme]] | |||
* [[GlpP regulon]], see also [[GlpP]] | |||
* [[Gly-box]] | |||
* [[HutP regulon]], see also [[HutP]] | |||
* [[L-box]] | |||
* [[LicT regulon]], see also [[LicT]] | |||
* [[M-box]] | |||
* [[preQ1 riboswitch]] | |||
* [[PyrR regulon]], see also [[PyrR]] | |||
* [[RplT regulon]], see also [[RplT]] | |||
* [[SacT regulon]], see also [[SacT]] | |||
* [[SacY regulon]], see also [[SacY]] | |||
* [[S-box]] | |||
* [[T-box]] | |||
* [[Thi-box]] | |||
* [[TRAP regulon]], see also [[MtrB]] | |||
* [[YdaO riboswitch]] | |||
* [[YkkC riboswitch]] | |||
* [[yybP-ykoY motif]] | |||
* [[RNA switch/ other]] | |||
= [[RNases]] = | |||
* [[RNase III targets]] | |||
* [[RNase Y targets]] | |||
= Additional regulatory mechanisms = | |||
* [[BmrB regulon]], see also [[BmrB]] | |||
* [[CitB regulon]], see also [[CitB]] | |||
* [[ComN regulon]], see also [[ComN]] | |||
* [[CsrA regulon]], see also [[CsrA]] | |||
* [[FbpB regulon]], see also ''[[FbpB]]'' | |||
* [[fsrA regulon]], see also ''[[fsrA]]'' | |||
* [[Kre regulon]], see also [[Kre]] | |||
* [[MifM regulon]], see also [[MifM]] | |||
* [[as-bsrH regulon]], see also ''[[as-bsrH]]'' | |||
* [[as-yonT regulon]], see also ''[[as-yonT]]'' | |||
* [[ratA regulon]], see also ''[[ratA]]'' | |||
* [[RoxS regulon]], see also [[RoxS]] | |||
* [[SR1 regulon]], see also [[sr1]] | |||
* [[Stringent response]] | |||
=Key publications= | |||
<pubmed> 22235300 </pubmed> | |||
Latest revision as of 09:13, 22 December 2016
Overview on the regulons in B. subtilis
Sigma factors
- SigB regulon, see also SigB
- SigD regulon, see also SigD
- SigE regulon, see also SigE
- SigF regulon, see also SigF
- SigG regulon, see also SigG
- SigH regulon, see also SigH
- SigI regulon, see also SigI
- SigK regulon, see also SigK
- SigL regulon, see also SigL
- SigM regulon, see also SigM
- SigV regulon, see also SigV
- SigW regulon, see also SigW
- SigX regulon, see also SigX
- SigY regulon, see also SigY
- Xpf regulon, see also Xpf
- YlaC regulon, see also YlaC
- SigO-RsoA regulon, see also SigO and RsoA
DNA-binding regulators
- Abh regulon, see also Abh
- AbrB regulon, see also AbrB
- AcoR regulon, see also AcoR
- AdaA regulon, see also AdaA
- AdeR regulon, see also AdeR
- AdhR regulon, see also AdhR
- AhrC regulon, see also AhrC
- AlsR regulon, see also AlsR
- AnsR regulon, see also AnsR
- AraR regulon, see also AraR
- ArsR regulon, see also ArsR
- AscR regulon, see also AscR
- AseR regulon, see also AseR
- AzlB regulon, see also AzlB
- BceR regulon, see also BceR
- BirA regulon, see also BirA
- BkdR regulon, see also BkdR
- BltR regulon, see also BltR
- BmrR regulon, see also BmrR
- BsdA regulon, see also BsdA
- Btr regulon, see also Btr
- CatR regulon, see also CatR
- CcpA regulon, see also CcpA
- CcpC regulon, see also CcpC
- CcpN regulon, see also CcpN
- CggR regulon, see also CggR
- ChrS regulon, see also ChrS
- CitR regulon, see also CitR
- CitT regulon, see also CitT
- CodY regulon, see also CodY
- ComA regulon, see also ComA
- ComK regulon, see also ComK
- CsoR regulon, see also CsoR
- CssR regulon, see also CssR
- CtsR regulon, see also CtsR
- CymR regulon, see also CymR
- CysL regulon, see also CysL
- CzrA regulon, see also CzrA
- DegU regulon, see also DegU
- DeoR regulon, see also DeoR
- DesR regulon, see also DesR
- DnaA regulon, see also DnaA
- DtrR regulon, see also DtrR
- ExuR regulon, see also ExuR
- FadR regulon, see also FadR
- FapR regulon, see also FapR
- FatR regulon, see also FatR
- Fnr regulon, see also Fnr
- FrlR regulon, see also FrlR
- FruR regulon, see also FruR
- Fur regulon, see also Fur
- GabR regulon, see also GabR
- GamR regulon, see also GamR
- GbsR regulon, see also GbsR
- GerE regulon, see also GerE
- GerR regulon, see also GerR
- GlnL regulon, see also GlnL
- GlnR regulon, see also GlnR
- GltC regulon, see also GltC
- GltR regulon, see also GltR
- GlvR regulon, see also GlvR
- GmuR regulon, see also GmuR
- GntR regulon, see also GntR
- GutR regulon, see also GutR
- HrcA regulon, see also HrcA
- HxlR regulon, see also HxlR
- HypR regulon, see also HypR
- ImmR regulon, see also ImmR
- IolR regulon, see also IolR
- KdgR regulon, see also KdgR
- KipR regulon, see also KipR
- LacR regulon, see also LacR
- LevR regulon, see also LevR
- LexA regulon, see also LexA
- LiaR regulon, see also LiaR
- LicR regulon, see also LicR
- LmrA regulon, see also LmrA
- LutR regulon, see also LutR
- LytT regulon, see also LytT
- MalR regulon, see also MalR
- ManR regulon, see also ManR
- MdtR regulon, see also MdtR
- MgsR regulon, see also MgsR
- MhqR regulon, see also MhqR
- MntR regulon, see also MntR
- Mta regulon, see also Mta
- MtlR regulon, see also MtlR
- NadR regulon, see also NadR
- NagR regulon, see also NagR
- NatR regulon, see also NatR
- NrdR regulon, see also NrdR
- NsrR regulon, see also NsrR
- NtdR regulon, see also NtdR
- OhrR regulon, see also OhrR
- OpcR regulon, see also OpcR
- PadR regulon, see also PadR
- PchR regulon, see also YvmB
- PerR regulon, see also PerR
- PhoP regulon, see also PhoP
- PsdR regulon, see also PsdR
- PucR regulon, see also PucR
- PurR regulon, see also PurR
- PutR regulon, see also PutR
- QdoR regulon, see also QdoR
- RemA regulon, see also RemA
- ResD regulon, see also ResD
- Rex regulon, see also Rex
- RghR regulon, see also RghR
- RhaR regulon, see also RhaR
- RhgR regulon, see also RhgR
- RocR regulon, see also RocR
- Rok regulon, see also Rok
- RsfA regulon, see also RsfA
- SalA regulon, see also SalA
- ScoC regulon, see also ScoC
- SdpR regulon, see also SdpR
- SenS regulon, see also SenS
- SinR regulon, see also SinR
- SknR regulon, see also SknR
- SlrR regulon, see also SlrR
- Spo0A regulon, see also Spo0A
- SpoIIID regulon, see also SpoIIID
- SpoVT regulon, see also SpoVT
- Spx regulon, see also Spx
- TilS-HprT regulon, see also TilS, HprT
- ThrR regulon, see also ThrR
- TnrA regulon, see also TnrA
- TreR regulon, see also TreR
- WalR regulon, see also WalR
- Xre regulon, see also Xre
- XylR regulon, see also XylR
- YcbG regulon, see also YcbG
- YclJ regulon, see also YclJ
- YcnK regulon, see also YcnK
- YdfI regulon, see also YdfI
- YetL regulon, see also YetL
- YfhP regulon, see also YfhP
- YfiK regulon, see also YfiK
- YfmP regulon, see also YfmP
- YkrK regulon, see also YkrK
- YodB regulon, see also YodB
- YofA regulon, see also YofA
- YrkP regulon, see also YrkP
- YtrA regulon, see also YtrA
- YvrHb regulon, see also YvrHb
- YwbI regulon, see also YwbI
- YwcC regulon, see also YwcC
- YxdJ regulon, see also YxdJ
- Zur regulon, see also Zur
RNA switches
- A-box
- B12 riboswitch
- EAR riboswitch
- FMN-box
- G-box
- GlcT regulon, see also GlcT
- glmS ribozyme
- GlpP regulon, see also GlpP
- Gly-box
- HutP regulon, see also HutP
- L-box
- LicT regulon, see also LicT
- M-box
- preQ1 riboswitch
- PyrR regulon, see also PyrR
- RplT regulon, see also RplT
- SacT regulon, see also SacT
- SacY regulon, see also SacY
- S-box
- T-box
- Thi-box
- TRAP regulon, see also MtrB
- YdaO riboswitch
- YkkC riboswitch
- yybP-ykoY motif
- RNA switch/ other
RNases
Additional regulatory mechanisms
- BmrB regulon, see also BmrB
- CitB regulon, see also CitB
- ComN regulon, see also ComN
- CsrA regulon, see also CsrA
- FbpB regulon, see also FbpB
- fsrA regulon, see also fsrA
- Kre regulon, see also Kre
- MifM regulon, see also MifM
- as-bsrH regulon, see also as-bsrH
- as-yonT regulon, see also as-yonT
- ratA regulon, see also ratA
- RoxS regulon, see also RoxS
- SR1 regulon, see also sr1
- Stringent response
Key publications
<pubmed> 22235300 </pubmed>