Difference between revisions of "SigB regulon"
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Regulator=[[SigB]] | Regulator=[[SigB]] | ||
}} | }} | ||
| + | |||
| + | == The SigB regulon is induced by a variety of stresses including nutrient limitation, heat, ethanol, or low pressure. == | ||
| + | |||
= Related pages = | = Related pages = | ||
* [[General stress proteins (controlled by SigB)]] | * [[General stress proteins (controlled by SigB)]] | ||
| Line 7: | Line 10: | ||
= Genes in this [[regulon]] = | = Genes in this [[regulon]] = | ||
| + | * [[S1136-1134]] | ||
* ''[[aag]]'' | * ''[[aag]]'' | ||
* ''[[aldY]]'' | * ''[[aldY]]'' | ||
| Line 34: | Line 38: | ||
* ''[[gtaB]]'' | * ''[[gtaB]]'' | ||
* ''[[guaD]]'' | * ''[[guaD]]'' | ||
| + | * ''[[hpf]]'' | ||
* ''[[iolW]]'' | * ''[[iolW]]'' | ||
* ''[[ispD]]'' | * ''[[ispD]]'' | ||
| Line 39: | Line 44: | ||
* ''[[katE]]'' | * ''[[katE]]'' | ||
* ''[[katX]]'' | * ''[[katX]]'' | ||
| − | |||
* ''[[mcsA]]'' | * ''[[mcsA]]'' | ||
* ''[[mcsB]]'' | * ''[[mcsB]]'' | ||
| Line 48: | Line 52: | ||
* ''[[nhaX]]'' | * ''[[nhaX]]'' | ||
* ''[[ohrB]]'' | * ''[[ohrB]]'' | ||
| + | * ''[[opuE]]'' | ||
* ''[[phoP]]'' | * ''[[phoP]]'' | ||
* ''[[phoR]]'' | * ''[[phoR]]'' | ||
| Line 53: | Line 58: | ||
* ''[[radA]]'' | * ''[[radA]]'' | ||
* ''[[rnr]]'' | * ''[[rnr]]'' | ||
| + | * ''[[rpmEB]]'' | ||
* ''[[rsbRD]]'' | * ''[[rsbRD]]'' | ||
* ''[[rsbV]]'' | * ''[[rsbV]]'' | ||
| Line 59: | Line 65: | ||
* ''[[sigB]]'' | * ''[[sigB]]'' | ||
* ''[[sodA]]'' | * ''[[sodA]]'' | ||
| + | * ''[[spo0E]]'' | ||
* ''[[spoVC]]'' | * ''[[spoVC]]'' | ||
* ''[[spx]]'' | * ''[[spx]]'' | ||
| Line 66: | Line 73: | ||
* ''[[yacL]]'' | * ''[[yacL]]'' | ||
* ''[[ybyB]]'' | * ''[[ybyB]]'' | ||
| − | |||
* ''[[ycbP]]'' | * ''[[ycbP]]'' | ||
* ''[[ycdF]]'' | * ''[[ycdF]]'' | ||
| Line 80: | Line 86: | ||
* ''[[ydaF]]'' | * ''[[ydaF]]'' | ||
* ''[[ydaG]]'' | * ''[[ydaG]]'' | ||
| + | * ''[[ydaJ]]-[[ydaK]]-[[ydaL]]-[[ydaM]]-[[ydaN]]'' | ||
* ''[[ydaP]]'' | * ''[[ydaP]]'' | ||
* ''[[ydaS]]'' | * ''[[ydaS]]'' | ||
| Line 137: | Line 144: | ||
* ''[[ysnF]]'' | * ''[[ysnF]]'' | ||
* ''[[ytaB]]'' | * ''[[ytaB]]'' | ||
| − | + | ||
* ''[[ytkL]]'' | * ''[[ytkL]]'' | ||
* ''[[ytxG]]'' | * ''[[ytxG]]'' | ||
| Line 148: | Line 155: | ||
* ''[[yvgO]]'' | * ''[[yvgO]]'' | ||
* ''[[yvrE]]'' | * ''[[yvrE]]'' | ||
| − | + | ||
* ''[[ywiE]]'' | * ''[[ywiE]]'' | ||
* ''[[ywjC]]'' | * ''[[ywjC]]'' | ||
| Line 166: | Line 173: | ||
* ''[[yxzF]]'' | * ''[[yxzF]]'' | ||
* ''[[yycD]]'' | * ''[[yycD]]'' | ||
| + | |||
| + | ==New members of the regulon== | ||
| + | * ''[[yczO]]'' | ||
| + | * ''[[ydaC]]'' | ||
| + | * ''[[yebE]]'' | ||
| + | * ''[[yebG]]'' | ||
| + | * ''[[yflD]]'' | ||
| + | * ''[[yflB]]'' | ||
| + | * ''[[yisP]]'' | ||
| + | * ''[[ipi]]'' | ||
| + | * ''[[yjlB]]'' | ||
| + | * ''[[ykzN]]'' | ||
| + | * ''[[spo0E]]'' | ||
| + | * ''[[yktC]]'' | ||
| + | * ''[[ykzC]]'' | ||
| + | * ''[[rbfA]]'' | ||
| + | * ''[[ytkC]]'' | ||
| + | * ''[[ytiB]]'' | ||
| + | * ''[[menC]]'' | ||
| + | * ''[[menE]]'' | ||
| + | * ''[[yuzH]]'' | ||
| + | * ''[[yvbG]]'' | ||
| + | * ''[[yvzE]]'' | ||
| + | * ''[[ywsA]]'' | ||
| + | * ''[[ywjA]]'' | ||
| + | * ''[[yydC]]'' | ||
| + | * ''[[yyzG]]'' | ||
| + | * ''[[yyzH]]'' | ||
| + | * ''[[yybO]]'' | ||
= Important publications on the [[SigB]] [[regulon]] = | = Important publications on the [[SigB]] [[regulon]] = | ||
| − | <pubmed> 11544224, 11532142, 10482513, 10220166</pubmed> | + | <pubmed> 11544224, 11532142, 10482513, 10220166 22174379 24878601 26577401 27518094</pubmed> |
= Back to [[regulons]]= | = Back to [[regulons]]= | ||
Latest revision as of 14:41, 28 October 2016
| Regulator | |
Contents
The SigB regulon is induced by a variety of stresses including nutrient limitation, heat, ethanol, or low pressure.
Related pages
Genes in this regulon
- S1136-1134
- aag
- aldY
- bmr
- bmrR
- bmrU
- bofC
- cdd
- chaA
- clpC
- clpP
- corA
- csbA
- csbB
- csbC
- csbD
- csbX
- ctc
- ctsR
- cypC
- disA
- dps
- era
- gabD
- gsiB
- gspA
- gtaB
- guaD
- hpf
- iolW
- ispD
- ispF
- katE
- katX
- mcsA
- mcsB
- mgsR
- mhqO
- mhqP
- nadE
- nhaX
- ohrB
- opuE
- phoP
- phoR
- plsC
- radA
- rnr
- rpmEB
- rsbRD
- rsbV
- rsbW
- rsbX
- sigB
- sodA
- spo0E
- spoVC
- spx
- trxA
- yaaH
- yaaI
- yacL
- ybyB
- ycbP
- ycdF
- ycdG
- yceC
- yceD
- yceE
- yceF
- yceG
- yceH
- ydaD
- ydaE
- ydaF
- ydaG
- ydaJ-ydaK-ydaL-ydaM-ydaN
- ydaP
- ydaS
- ydaT
- ydbD
- ydeC
- ydhK
- yerD
- yfhD
- yfhE
- yfhF
- yfhK
- yfhL
- yfhM
- yfkD
- yfkH
- yfkI
- yfkJ
- yfkM
- yfkS
- yfkT
- yflA
- yflH
- yflT
- ygxB
- yhcM
- yhdF
- yhdN
- yhxD
- yitT
- yjbC
- yjgB
- yjgC
- yjgD
- yjzE
- ykgA
- ykgB
- ykuT
- ykzI
- ylxP
- ymzB
- yoaA
- yocB
- yocK
- yoxB
- yoxC
- ypuB
- ypuC/1
- ypuC/2
- ypuD
- yqhB
- yqhP
- yqhQ
- yqjL
- yraA
- ysdB
- ysnF
- ytaB
New members of the regulon
- yczO
- ydaC
- yebE
- yebG
- yflD
- yflB
- yisP
- ipi
- yjlB
- ykzN
- spo0E
- yktC
- ykzC
- rbfA
- ytkC
- ytiB
- menC
- menE
- yuzH
- yvbG
- yvzE
- ywsA
- ywjA
- yydC
- yyzG
- yyzH
- yybO
Important publications on the SigB regulon
Wolfgang Schumann
Regulation of bacterial heat shock stimulons.
Cell Stress Chaperones: 2016, 21(6);959-968
[PubMed:27518094]
[WorldCat.org]
[DOI]
(I p)
Mario L Arrieta-Ortiz, Christoph Hafemeister, Ashley Rose Bate, Timothy Chu, Alex Greenfield, Bentley Shuster, Samantha N Barry, Matthew Gallitto, Brian Liu, Thadeous Kacmarczyk, Francis Santoriello, Jie Chen, Christopher D A Rodrigues, Tsutomu Sato, David Z Rudner, Adam Driks, Richard Bonneau, Patrick Eichenberger
An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network.
Mol Syst Biol: 2015, 11(11);839
[PubMed:26577401]
[WorldCat.org]
[DOI]
(I e)
Samantha M Waters, José A Robles-Martínez, Wayne L Nicholson
Exposure of Bacillus subtilis to low pressure (5 kilopascals) induces several global regulons, including those involved in the SigB-mediated general stress response.
Appl Environ Microbiol: 2014, 80(16);4788-94
[PubMed:24878601]
[WorldCat.org]
[DOI]
(I p)
Priyanka Nannapaneni, Falk Hertwig, Maren Depke, Michael Hecker, Ulrike Mäder, Uwe Völker, Leif Steil, Sacha A F T van Hijum
Defining the structure of the general stress regulon of Bacillus subtilis using targeted microarray analysis and random forest classification.
Microbiology (Reading): 2012, 158(Pt 3);696-707
[PubMed:22174379]
[WorldCat.org]
[DOI]
(I p)
A Petersohn, M Brigulla, S Haas, J D Hoheisel, U Völker, M Hecker
Global analysis of the general stress response of Bacillus subtilis.
J Bacteriol: 2001, 183(19);5617-31
[PubMed:11544224]
[WorldCat.org]
[DOI]
(P p)
C W Price, P Fawcett, H Cérémonie, N Su, C K Murphy, P Youngman
Genome-wide analysis of the general stress response in Bacillus subtilis.
Mol Microbiol: 2001, 41(4);757-74
[PubMed:11532142]
[WorldCat.org]
[DOI]
(P p)
A Petersohn, J Bernhardt, U Gerth, D Höper, T Koburger, U Völker, M Hecker
Identification of sigma(B)-dependent genes in Bacillus subtilis using a promoter consensus-directed search and oligonucleotide hybridization.
J Bacteriol: 1999, 181(18);5718-24
[PubMed:10482513]
[WorldCat.org]
[DOI]
(P p)
Anja Petersohn, Haike Antelmann, Ulf Gerth, Michael Hecker
Identification and transcriptional analysis of new members of the sigmaB regulon in Bacillus subtilis.
Microbiology (Reading): 1999, 145 ( Pt 4);869-880
[PubMed:10220166]
[WorldCat.org]
[DOI]
(P p)
