Difference between revisions of "SigK regulon"
(→Genes in this regulon) |
(→Genes in this regulon) |
||
| (14 intermediate revisions by the same user not shown) | |||
| Line 4: | Line 4: | ||
= Genes in this [[regulon]] = | = Genes in this [[regulon]] = | ||
| − | + | * ''[[cgeA]]-[[cgeB]]'' | |
| − | * ''[[cgeA]] | + | * ''[[cgeC]]-[[cgeD]]-[[cgeE]]'' |
| − | |||
| − | * ''[[cgeC]] | ||
| − | |||
| − | |||
* ''[[cotA]]'' | * ''[[cotA]]'' | ||
| − | |||
* ''[[cotC]]'' | * ''[[cotC]]'' | ||
* ''[[cotD]]'' | * ''[[cotD]]'' | ||
| Line 17: | Line 12: | ||
* ''[[cotF]]'' | * ''[[cotF]]'' | ||
* ''[[cotG]]'' | * ''[[cotG]]'' | ||
| − | * ''[[cotH]]'' | + | * ''[[cotH]]-[[cotB]]-[[ywrJ]]'' |
* ''[[cotI]]'' | * ''[[cotI]]'' | ||
* ''[[cotM]]'' | * ''[[cotM]]'' | ||
| − | |||
* ''[[cotQ]]'' | * ''[[cotQ]]'' | ||
* ''[[cotR]]'' | * ''[[cotR]]'' | ||
| − | * ''[[cotS]] | + | * ''[[cotSA]]-[[cotS]]-[[ytxO]]'' |
| − | |||
* ''[[cotT]]'' | * ''[[cotT]]'' | ||
| − | * ''[[ | + | * ''[[cotU]]'' |
| − | * ''[[cotW]] | + | * ''[[cotV]]-[[cotW]]-[[cotX]]'' |
| − | + | * ''[[cotY]]-[[cotZ]]'' | |
| − | * ''[[cotY]]'' | + | * ''[[csfB]]'' |
| − | * ''[[ | ||
* ''[[cwlC]]'' | * ''[[cwlC]]'' | ||
* ''[[cwlH]]'' | * ''[[cwlH]]'' | ||
* ''[[cwlJ]]'' | * ''[[cwlJ]]'' | ||
| − | |||
| − | |||
* ''[[ftsY]]'' | * ''[[ftsY]]'' | ||
* ''[[gerE]]'' | * ''[[gerE]]'' | ||
| − | * ''[[gerPA]] | + | * ''[[gerPA]]-[[gerPB]]-[[gerPC]]-[[gerPD]]-[[gerPE]]-[[gerPF]]'' |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[gerT]]'' | * ''[[gerT]]'' | ||
* ''[[ldt]]'' | * ''[[ldt]]'' | ||
| Line 49: | Line 34: | ||
* ''[[lytH]]'' | * ''[[lytH]]'' | ||
* ''[[oxdD]]'' | * ''[[oxdD]]'' | ||
| − | * ''[[ | + | * ''[[pghL]]'' |
* ''[[spoIISA]]'' | * ''[[spoIISA]]'' | ||
| − | * ''[[spoIVCB]]'' | + | * ''[[spoIVCB]]-[[spoIIIC]]'' (composite ''[[sigK]]'' gene) |
| − | + | * ''[[spoVFA]]-[[spoVFB]][[asd]]-[[dapG]]-[[dapA]]'' | |
| − | * ''[[spoVFB]]'' | ||
* ''[[spoVIF]]'' | * ''[[spoVIF]]'' | ||
* ''[[spoVK]]'' | * ''[[spoVK]]'' | ||
| − | * ''[[spsA]] | + | * ''[[spsA]]-[[spsB]]-[[spsC]]-[[spsD]]-[[spsE]]-[[spsF]]-[[spsG]]-[[spsI]]-[[spsJ]]-[[spsK]]-[[spsL]]'' |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[sscA]]'' | * ''[[sscA]]'' | ||
| − | * ''[[sspG]]'' | + | * ''[[sspG]]-[[yurS]]'' |
* ''[[surC]]'' | * ''[[surC]]'' | ||
* ''[[tgl]]'' | * ''[[tgl]]'' | ||
* ''[[xpaC]]-[[yaaN]]-[[yaaO]]'' | * ''[[xpaC]]-[[yaaN]]-[[yaaO]]'' | ||
* ''[[yabG]]'' | * ''[[yabG]]'' | ||
| − | * ''[[ydgA]] | + | * ''[[ydgB]]-[[ydgA]]-[[cotP]]'' |
| − | |||
* ''[[yeeK]]'' | * ''[[yeeK]]'' | ||
| − | * ''[[ | + | * ''[[yfnH]]-[[yfnG]]-[[yfnF]]-[[yfnE]]-[[yfnD]]'' |
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[yhcO]]'' | * ''[[yhcO]]'' | ||
* ''[[yhjR]]'' | * ''[[yhjR]]'' | ||
* ''[[yisY]]'' | * ''[[yisY]]'' | ||
| − | * ''[[ | + | * ''[[yitB]]-[[yitA]]-[[yisZ]]'' |
| − | + | * ''[[yitC]]-[[yitD]]'' | |
| − | |||
| − | * ''[[yitC]] | ||
| − | |||
* ''[[yjzB]]'' | * ''[[yjzB]]'' | ||
| − | * ''[[ykvP]] | + | * ''[[ykvP]]-[[ykvQ]]'' |
| − | + | * ''[[ylbD]]-[[ylbE]]'' | |
| − | * ''[[ylbD]] | ||
| − | |||
* ''[[ymaG]]'' | * ''[[ymaG]]'' | ||
| − | + | ||
* ''[[yobW]]'' | * ''[[yobW]]'' | ||
| − | * ''[[yodH]]'' | + | * ''[[yodH]]-[[yodI]]'' |
| − | * ''[[ | + | * ''[[yodU]]'' |
* ''[[yppG]]'' | * ''[[yppG]]'' | ||
* ''[[ypqA]]'' | * ''[[ypqA]]'' | ||
| Line 106: | Line 70: | ||
* ''[[ysnD]]'' | * ''[[ysnD]]'' | ||
* ''[[ytcA]]-[[ytcB]]-[[ytcC]]'' | * ''[[ytcA]]-[[ytcB]]-[[ytcC]]'' | ||
| − | * ''[[ | + | * ''[[ytdA]]'' |
| − | * ''[[ | + | * ''[[ytlA]]-[[ytlC]]-[[ytlD]]'' |
| − | |||
| − | |||
| − | |||
| − | |||
* ''[[yxeE]]'' | * ''[[yxeE]]'' | ||
Latest revision as of 17:58, 2 December 2015
| Regulator | |
Genes in this regulon
- cgeA-cgeB
- cgeC-cgeD-cgeE
- cotA
- cotC
- cotD
- cotE
- cotF
- cotG
- cotH-cotB-ywrJ
- cotI
- cotM
- cotQ
- cotR
- cotSA-cotS-ytxO
- cotT
- cotU
- cotV-cotW-cotX
- cotY-cotZ
- csfB
- cwlC
- cwlH
- cwlJ
- ftsY
- gerE
- gerPA-gerPB-gerPC-gerPD-gerPE-gerPF
- gerT
- ldt
- lipC
- lytH
- oxdD
- pghL
- spoIISA
- spoIVCB-spoIIIC (composite sigK gene)
- spoVFA-spoVFBasd-dapG-dapA
- spoVIF
- spoVK
- spsA-spsB-spsC-spsD-spsE-spsF-spsG-spsI-spsJ-spsK-spsL
- sscA
- sspG-yurS
- surC
- tgl
- xpaC-yaaN-yaaO
- yabG
- ydgB-ydgA-cotP
- yeeK
- yfnH-yfnG-yfnF-yfnE-yfnD
- yhcO
- yhjR
- yisY
- yitB-yitA-yisZ
- yitC-yitD
- yjzB
- ykvP-ykvQ
- ylbD-ylbE
- ymaG
Important publications on the SigK regulon
Jessica M Silvaggi, John B Perkins, Richard Losick
Genes for small, noncoding RNAs under sporulation control in Bacillus subtilis.
J Bacteriol: 2006, 188(2);532-41
[PubMed:16385044]
[WorldCat.org]
[DOI]
(P p)
Patrick Eichenberger, Masaya Fujita, Shane T Jensen, Erin M Conlon, David Z Rudner, Stephanie T Wang, Caitlin Ferguson, Koki Haga, Tsutomu Sato, Jun S Liu, Richard Losick
The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis.
PLoS Biol: 2004, 2(10);e328
[PubMed:15383836]
[WorldCat.org]
[DOI]
(I p)
