Difference between revisions of "EpsJ"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[epsK]]'', ''[[epsI]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[epsK]]'', ''[[epsI]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU34280 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU34280 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU34280 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU34280 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU34280 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU34280 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yveT_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yveT_context.gif]]

Revision as of 11:19, 14 May 2013

  • Description: similar to 1,4-galactosyltransferase

Gene name epsJ
Synonyms yveT
Essential no
Product unknown
Function biofilm formation
Gene expression levels in SubtiExpress: epsJ
Regulation of this protein in SubtiPathways:
Biofilm
MW, pI 39 kDa, 7.567
Gene length, protein length 1032 bp, 344 aa
Immediate neighbours epsK, epsI
Sequences Protein DNA DNA_with_flanks
Genetic context
YveT context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
EpsJ expression.png















Categories containing this gene/protein

biofilm formation

This gene is a member of the following regulons

AbrB regulon, EAR riboswitch, SinR regulon

The gene

Basic information

  • Locus tag: BSU34280

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: glycosyltransferase 2 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Richard Losick, Harvard Univ., Cambridge, USA homepage

Your additional remarks

References

Reviews

Original publications

The EAR RNA switch

Irnov Irnov, Wade C Winkler
A regulatory RNA required for antitermination of biofilm and capsular polysaccharide operons in Bacillales.
Mol Microbiol: 2010, 76(3);559-75
[PubMed:20374491] [WorldCat.org] [DOI] (I p)

Zasha Weinberg, Joy X Wang, Jarrod Bogue, Jingying Yang, Keith Corbino, Ryan H Moy, Ronald R Breaker
Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes.
Genome Biol: 2010, 11(3);R31
[PubMed:20230605] [WorldCat.org] [DOI] (I p)

Other original publications