pamR

pamR
168

MarR/DUF24 family transcription factor

Locus
BSU_04770
Molecular weight
16.49 kDa
Isoelectric point
9.36
Protein length
147 aaSequenceBlast
Gene length
444 bpSequenceBlast
Function
control of the ydcF-ydcG-pamR operon
Product
MarR/DUF24 family transcription factor
Essential
no
Synonyms
pamR, ydcH
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1846 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
525,206 → 525,649
The protein
Protein family
MarR/DUF24 family
Domains
HTH marR-type domain (aa 11-147) (according to UniProt)
Structure
3BPX (PDB) (MarR from Methanothermobacter thermautotrophicus, 28% identity, aa 29 - 137) PubMed
P96625 (AlphaFold)
Expression and Regulation
Operons
Genes
ydcF-ydcG-pamR
Description
PubMed
Regulatory mechanism
PamR: repression, PubMed, in pamR regulon
Open in new tab

ydcF→pamR

2025-04-08 00:30:57

Jstuelk

82

eb71f7532e6d3b94d6ab81a388b18c0580730f8a

368EDFBA29B4EA905E483E41BEFB00B731CFA490

Genes
ydcG-pamR
Description
PubMed
Sigma factors
SigA: sigma factor, PubMed, in sigA regulon
Open in new tab

ydcG→pamR

2025-04-03 14:10:15

Jstuelk

78

c5a7e7f447093e72eb642246e70fcb314785420a

DA11DAE8932F43B3BC340229664BFE8ECBB211EB

Biological materials
Mutant
MGNA-C096 (ydcH::erm), available at the NBRP B. subtilis, Japan
BKE04770 (ΔpamR::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CGGGCTTGTGTTCGGACCGC,  downstream forward: _UP4_TAAAGATACGGGCAGCGCCA
BKK04770 (ΔpamR::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CGGGCTTGTGTTCGGACCGC,  downstream forward: _UP4_TAAAGATACGGGCAGCGCCA
References
Research papers
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Page visits: 2581

Time of last update: 2025-04-08 01:33:47

Author of last update: Melvin.boenninger