ydcG

ydcG
168

binds to DNA lesions, may be involved in DNA repair

locus
BSU_04760
Molecular weight
16.46 kDa
pI
9.61
Protein length
146 aaSequenceBlast
Gene length
441 bpSequenceBlast
function
unknown
product
unknown
essential
no
synonyms
ydcG
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms

This gene is a member of the following regulons

Gene
Coordinates
524,782  525,222
The protein
Catalyzed reaction/ biological activity
binds to RNA base DNA lesions [pubmed|37250769]
Protein family
UPF0310 family (single member, according to UniProt)
Structure
[AF|P96624]
Expression and Regulation
Operons
genes
[gene|20D50DA11B864E6C719CC34BE27C7900893EA054|ydcF]-[gene|89AB146F447696EF1CBE219C9A2FB5CBB380F847|ydcG]-[gene|B7F5FA5C656D39970959BC857E93B78B1A063098|pamR]
description
[pubmed|29240826,22383849]
regulatory mechanism
[protein|B7F5FA5C656D39970959BC857E93B78B1A063098|pamR]: repression, [pubmed|29240826], in [regulon|protein:B7F5FA5C656D39970959BC857E93B78B1A063098|pamR regulon]
Open in new tab

[gene|20D50DA11B864E6C719CC34BE27C7900893EA054|ydcF]→[gene|B7F5FA5C656D39970959BC857E93B78B1A063098|pamR]

2024-12-09 00:06:59

Jstuelk

69

eb71f7532e6d3b94d6ab81a388b18c0580730f8a

368EDFBA29B4EA905E483E41BEFB00B731CFA490

genes
[gene|89AB146F447696EF1CBE219C9A2FB5CBB380F847|ydcG]-[gene|B7F5FA5C656D39970959BC857E93B78B1A063098|pamR]
description
[pubmed|22383849]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [pubmed|22383849], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
Open in new tab

[gene|89AB146F447696EF1CBE219C9A2FB5CBB380F847|ydcG]→[gene|B7F5FA5C656D39970959BC857E93B78B1A063098|pamR]

2024-12-26 13:00:26

Jstuelk

67

c5a7e7f447093e72eb642246e70fcb314785420a

DA11DAE8932F43B3BC340229664BFE8ECBB211EB

Biological materials
Mutant
MGNA-C095 (ydcG::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2093 NBRP B. subtilis, Japan]
BKE04760 ([gene|89AB146F447696EF1CBE219C9A2FB5CBB380F847|ydcG]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE04760 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_AACGCCGATCCAGTAATTTG,  downstream forward: _UP4_GCACAAGCGATGGGAGTTAA
BKK04760 ([gene|89AB146F447696EF1CBE219C9A2FB5CBB380F847|ydcG]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK04760 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_AACGCCGATCCAGTAATTTG,  downstream forward: _UP4_GCACAAGCGATGGGAGTTAA
References
Research papers
29240826,37250769

89AB146F447696EF1CBE219C9A2FB5CBB380F847

Page visits: 1706

Time of last update: 2024-12-26 09:11:49

Author of last update: Jstuelk