ydfI
168
two-component response regulator, control of [gene|1B61298ECA583D2112AA56A88358E8A9A55D2C9D|ydfJ] expression
locus
BSU_05420
Molecular weight
23.83 kDa
pI
5.38
function
control of [gene|1B61298ECA583D2112AA56A88358E8A9A55D2C9D|ydfJ] expression
product
two-component response regulator
essential
no
synonyms
ydfI
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG2197 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
588,960 → 589,601
The protein
[wiki|Domains]
[wiki|Response regulatory domain] (aa 3-118) (according to UniProt)
[wiki|HTH luxR-type domain] (aa 142-207) (according to UniProt)
Structure
[PDB|5HEV] ([protein|search|LiaR ]from Enterococcus faecium, 37% identity) [pubmed|27670715]
[AF|P96686]
Modification
phosphorylation by [protein|C86BAEE3DC97A96EFB85A0E2DF44AD69ED04744C|ydfH] on an Asp residue
Paralogous protein(s)
[protein|23F365C23BDEE02D42C9355FC7D2A65DAF9F79ED|yxjL], [protein|387EF370CE24F7A3C20789A57329A02EBED46F53|lnrK], [protein|49E70A20CC05DBE485953C0AE34E634EFB33C3B2|liaR], [protein|DD799ED3EB79457C27ED30C7B4DBBC2C8F962191|yhcZ]
[wiki|Localization]
cytoplasma (according to Swiss-Prot)
Expression and Regulation
Operons
genes
[gene|C86BAEE3DC97A96EFB85A0E2DF44AD69ED04744C|ydfH]-[gene|EFEAF09E4449A022A7323450FDED9458426A0080|ydfI]
description
[Pubmed|15941986]
Biological materials
Mutant
MGNA-C148 (ydfI::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2146 NBRP B. subtilis, Japan]
BKE05420 (Δ[gene|EFEAF09E4449A022A7323450FDED9458426A0080|ydfI]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE05420 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AAGATGGTCATCAACGATTA, downstream forward: _UP4_TAAACTGCATATTTGAAAAT
BKK05420 (Δ[gene|EFEAF09E4449A022A7323450FDED9458426A0080|ydfI]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK05420 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AAGATGGTCATCAACGATTA, downstream forward: _UP4_TAAACTGCATATTTGAAAAT
References
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Time of last update: 2024-12-21 10:03:13
Author of last update: Christoph.elfmann