Regulons: Difference between revisions
No edit summary |
|||
| Line 3: | Line 3: | ||
= [[Sigma factors]] = | = [[Sigma factors]] = | ||
* [[SigB regulon]] | * [[SigB regulon]], see also [[SigB]] | ||
* [[SigD regulon]] | * [[SigD regulon]], see also [[SigD]] | ||
* [[SigE regulon]] | * [[SigE regulon]], see also [[SigE]] | ||
* [[SigF regulon]] | * [[SigF regulon]], see also [[SigF]] | ||
* [[SigG regulon]] | * [[SigG regulon]], see also [[SigG]] | ||
* [[SigH regulon]] | * [[SigH regulon]], see also [[SigH]] | ||
* [[SigI regulon]] | * [[SigI regulon]], see also [[SigI]] | ||
* [[SigK regulon]] | * [[SigK regulon]], see also [[SigK]] | ||
* [[SigL regulon]] | * [[SigL regulon]], see also [[SigL]] | ||
* [[SigM regulon]] | * [[SigM regulon]], see also [[SigM]] | ||
* [[SigW regulon]] | * [[SigW regulon]], see also [[SigW]] | ||
* [[SigX regulon]] | * [[SigX regulon]], see also [[SigX]] | ||
* [[SigY regulon]] | * [[SigY regulon]], see also [[SigY]] | ||
* [[Xpf regulon]] | * [[Xpf regulon]], see also [[Xpf]] | ||
* [[YlaC regulon]] | * [[YlaC regulon]], see also [[YlaC]] | ||
* [[YvrI-YvrHa regulon]] | * [[YvrI-YvrHa regulon]], see also [[YvrI]] and [[YvrHa]] | ||
= DNA-binding regulators = | = DNA-binding regulators = | ||
* [[Abh regulon]] | * [[Abh regulon]], see also [[Abh]] | ||
* [[AbrB regulon]] | * [[AbrB regulon]], see also [[AbrB]] | ||
* [[AcoR regulon]] | * [[AcoR regulon]], see also [[AcoR]] | ||
* [[AdaA regulon]] | * [[AdaA regulon]], see also [[AdaR]] | ||
* [[AdhR regulon]] | * [[AdhR regulon]], see also [[AdhR]] | ||
* [[AhrC regulon]] | * [[AhrC regulon]], see also [[AhrC]] | ||
* [[AlsR regulon]] | * [[AlsR regulon]], see also [[AlsR]] | ||
* [[AnsR regulon]] | * [[AnsR regulon]], see also [[AnsR]] | ||
* [[AraR regulon]] | * [[AraR regulon]], see also [[AraR]] | ||
* [[ArsR regulon]] | * [[ArsR regulon]], see also [[ArsR]] | ||
* [[AseR regulon]] | * [[AseR regulon]], see also [[AseR]] | ||
* [[AzlB regulon]] | * [[AzlB regulon]], see also [[AzlB]] | ||
* [[BceR regulon]] | * [[BceR regulon]], see also [[BceR]] | ||
* [[BirA regulon]] | * [[BirA regulon]], see also [[BirA]] | ||
* [[BkdR regulon]] | * [[BkdR regulon]], see also [[BkdR]] | ||
* [[BltR regulon]] | * [[BltR regulon]], see also [[BltR]] | ||
* [[BmrR regulon]] | * [[BmrR regulon]], see also [[BmrR]] | ||
* [[BsdA regulon]] | * [[BsdA regulon]], see also [[BsdA]] | ||
* [[Btr regulon]] | * [[Btr regulon]], see also [[Btr]] | ||
* [[CatR regulon]] | * [[CatR regulon]], see also [[CatR]] | ||
* [[CcpA regulon]] | * [[CcpA regulon]], see also [[CcpA]] | ||
* [[CcpC regulon]] | * [[CcpC regulon]], see also [[CcpC]] | ||
* [[CcpN regulon]] | * [[CcpN regulon]], see also [[CcpN]] | ||
* [[CggR regulon]] | * [[CggR regulon]], see also [[CggR]] | ||
* [[CitR regulon]] | * [[CitR regulon]], see also [[CitR]] | ||
* [[CitT regulon]] | * [[CitT regulon]], see also [[CitT]] | ||
* [[CodY regulon]] | * [[CodY regulon]], see also [[CodY]] | ||
* [[ComA regulon]] | * [[ComA regulon]], see also [[ComA]] | ||
* [[ComK regulon]] | * [[ComK regulon]], see also [[ComK]] | ||
* [[Cso regulon]] | * [[Cso regulon]], see also [[Cso]] | ||
* [[CsoR regulon]] | * [[CsoR regulon]], see also [[CsoR]] | ||
* [[CssR regulon]] | * [[CssR regulon]], see also [[CssR]] | ||
* [[CtsR regulon]] | * [[CtsR regulon]], see also [[CtsR]] | ||
* [[CymR regulon]] | * [[CymR regulon]], see also [[CymR]] | ||
* [[CysL regulon]] | * [[CysL regulon]], see also [[CysL]] | ||
* [[CzrA regulon]] | * [[CzrA regulon]], see also [[CzrA]] | ||
* [[DegU regulon]] | * [[DegU regulon]], see also [[DegU]] | ||
* [[DeoR regulon]] | * [[DeoR regulon]], see also [[DeoR]] | ||
* [[DesR regulon]] | * [[DesR regulon]], see also [[DesR]] | ||
* [[DnaA regulon]] | * [[DnaA regulon]], see also [[DnaA]] | ||
* [[ExuR regulon]] | * [[ExuR regulon]], see also [[ExuR]] | ||
* [[FadR regulon]] | * [[FadR regulon]], see also [[FadR]] | ||
* [[FapR regulon]] | * [[FapR regulon]], see also [[FapR]] | ||
* [[FatR regulon]] | * [[FatR regulon]], see also [[FatR]] | ||
* [[Fnr regulon]] | * [[Fnr regulon]], see also [[Fnr]] | ||
* [[FruR regulon]] | * [[FruR regulon]], see also [[FruR]] | ||
* [[Fur regulon]] | * [[Fur regulon]], see also [[Fur]] | ||
* [[GabR regulon]] | * [[GabR regulon]], see also [[GabR]] | ||
* [[GerE regulon]] | * [[GerE regulon]], see also [[GerE]] | ||
* [[GerR regulon]] | * [[GerR regulon]], see also [[GerR]] | ||
* [[GlnL regulon]] | * [[GlnL regulon]], see also [[GlnL]] | ||
* [[GlnR regulon]] | * [[GlnR regulon]], see also [[GlnR]] | ||
* [[GltC regulon]] | * [[GltC regulon]], see also [[GltC]] | ||
* [[GltR regulon]] | * [[GltR regulon]], see also [[GltR]] | ||
* [[GlvR regulon]] | * [[GlvR regulon]], see also [[GlvR]] | ||
* [[GmuR regulon]] | * [[GmuR regulon]], see also [[GmuR]] | ||
* [[GntR regulon]] | * [[GntR regulon]], see also [[GntR]] | ||
* [[GutR regulon]] | * [[GutR regulon]], see also [[GutR]] | ||
* [[HrcA regulon]] | * [[HrcA regulon]], see also [[HrcA]] | ||
* [[HxlR regulon]] | * [[HxlR regulon]], see also [[HxlR]] | ||
* [[ImmR regulon]] | * [[ImmR regulon]], see also [[ImmR]] | ||
* [[IolR regulon]] | * [[IolR regulon]], see also [[IolR]] | ||
* [[KdgR regulon]] | * [[KdgR regulon]], see also [[KdgR]] | ||
* [[KipR regulon]] | * [[KipR regulon]], see also [[KipR]] | ||
* [[LacR regulon]] | * [[LacR regulon]], see also [[LacR]] | ||
* [[LevR regulon]] | * [[LevR regulon]], see also [[LevR]] | ||
* [[LexA regulon]] | * [[LexA regulon]], see also [[LexA]] | ||
* [[LiaR regulon]] | * [[LiaR regulon]], see also [[LiaR]] | ||
* [[LicR regulon]] | * [[LicR regulon]], see also [[LicR]] | ||
* [[LmrA regulon]] | * [[LmrA regulon]], see also [[LmrA]] | ||
* [[LutR regulon]] | * [[LutR regulon]], see also [[LutR]] | ||
* [[LytR regulon]] | * [[LytR regulon]], see also [[LytR]] | ||
* [[MalR regulon]] | * [[MalR regulon]], see also [[MalR]] | ||
* [[ManR regulon]] | * [[ManR regulon]], see also [[ManR]] | ||
* [[MdtR regulon]] | * [[MdtR regulon]], see also [[MdtR]] | ||
* [[MhqR regulon]] | * [[MhqR regulon]], see also [[MhqR]] | ||
* [[MntR regulon]] | * [[MntR regulon]], see also [[MntR]] | ||
* [[Mta regulon]] | * [[Mta regulon]], see also [[Mta]] | ||
* [[MtlR regulon]] | * [[MtlR regulon]], see also [[MtlR]] | ||
* [[NadR regulon]] | * [[NadR regulon]], see also [[NadR]] | ||
* [[NatR regulon]] | * [[NatR regulon]], see also [[NatR]] | ||
* [[NsrR regulon]] | * [[NsrR regulon]], see also [[NsrR]] | ||
* [[NtdR regulon]] | * [[NtdR regulon]], see also [[NtdR]] | ||
* [[OhrR regulon]] | * [[OhrR regulon]], see also [[OhrR]] | ||
* [[PadR regulon]] | * [[PadR regulon]], see also [[PadR]] | ||
* [[PerR regulon]] | * [[PerR regulon]], see also [[PerR]] | ||
* [[PhoP regulon]] | * [[PhoP regulon]], see also [[PhoP]] | ||
* [[PucR regulon]] | * [[PucR regulon]], see also [[PucR]] | ||
* [[PurR regulon]] | * [[PurR regulon]], see also [[PurR]] | ||
* [[ResD regulon]] | * [[ResD regulon]], see also [[ResD]] | ||
* [[Rex regulon]] | * [[Rex regulon]], see also [[Rex]] | ||
* [[RghR regulon]] | * [[RghR regulon]], see also [[RghR]] | ||
* [[RocR regulon]] | * [[RocR regulon]], see also [[RocR]] | ||
* [[Rok regulon]] | * [[Rok regulon]], see also [[Rok]] | ||
* [[RsfA regulon]] | * [[RsfA regulon]], see also [[RsfA]] | ||
* [[SalA regulon]] | * [[SalA regulon]], see also [[SalA]] | ||
* [[ScoC regulon]] | * [[ScoC regulon]], see also [[ScoC]] | ||
* [[SdpR regulon]] | * [[SdpR regulon]], see also [[SdpR]] | ||
* [[SenS regulon]] | * [[SenS regulon]], see also [[SenS]] | ||
* [[SinR regulon]] | * [[SinR regulon]], see also [[SinA]] | ||
* [[SlrR regulon]] | * [[SlrR regulon]], see also [[SlrR]] | ||
* [[Spo0A regulon]] | * [[Spo0A regulon]], see also [[Spo0A]] | ||
* [[SpoIIID regulon]] | * [[SpoIIID regulon]], see also [[SpoIIID]] | ||
* [[Spx regulon]] | * [[Spx regulon]], see also [[Spx]] | ||
* [[TnrA regulon]] | * [[TnrA regulon]], see also [[TnrA]] | ||
* [[TreR regulon]] | * [[TreR regulon]], see also [[TreR]] | ||
* [[WalR regulon]] | * [[WalR regulon]], see also [[WalR]] | ||
* [[Xre regulon]] | * [[Xre regulon]], see also [[Xre]] | ||
* [[XylR regulon]] | * [[XylR regulon]], see also [[XylR]] | ||
* [[YcbG regulon]] | * [[YcbG regulon]], see also [[YcbG]] | ||
* [[YclJ regulon]] | * [[YclJ regulon]], see also [[YclJ]] | ||
* [[YcnK regulon]] | * [[YcnK regulon]], see also [[YcnK]] | ||
* [[YdfI regulon]] | * [[YdfI regulon]], see also [[YdfI]] | ||
* [[YesS regulon]] | * [[YesS regulon]], see also [[YesS]] | ||
* [[YetL regulon]] | * [[YetL regulon]], see also [[YetL]] | ||
* [[YfhP regulon]] | * [[YfhP regulon]], see also [[YfhP]] | ||
* [[YfmP regulon]] | * [[YfmP regulon]], see also [[YfmP]] | ||
* [[YkrP regulon]] | * [[YkrP regulon]], see also [[YkrP]] | ||
* [[YodB regulon]] | * [[YodB regulon]], see also [[YobB]] | ||
* [[YofA regulon]] | * [[YofA regulon]], see also [[YofA]] | ||
* [[YrkP regulon]] | * [[YrkP regulon]], see also [[YrkP]] | ||
* [[YtlI regulon]] | * [[YtlI regulon]], see also [[YtlI]] | ||
* [[YtrA regulon]] | * [[YtrA regulon]], see also [[YtrA]] | ||
* [[YvoA regulon]] | * [[YvoA regulon]], see also [[YvoA]] | ||
* [[YvrHb regulon]] | * [[YvrHb regulon]], see also [[YvrHb]] | ||
* [[YwcC regulon]] | * [[YwcC regulon]], see also [[YwcC]] | ||
* [[YxaF regulon]] | * [[YxaF regulon]], see also [[YxaF]] | ||
* [[YxdJ regulon]] | * [[YxdJ regulon]], see also [[YxdJ]] | ||
* [[Zur regulon]] | * [[Zur regulon]], see also [[Zur]] | ||
= [[RNA switch|RNA switches]] = | = [[RNA switch|RNA switches]] = | ||
| Line 158: | Line 158: | ||
* [[FMN-box]] | * [[FMN-box]] | ||
* [[G-box]] | * [[G-box]] | ||
* [[GlcT regulon]] | * [[GlcT regulon]], see also [[GlcT]] | ||
* [[glmS ribozyme]] | * [[glmS ribozyme]] | ||
* [[GlpP regulon]] | * [[GlpP regulon]], see also [[GlpP]] | ||
* [[HutP regulon]] | * [[HutP regulon]], see also [[HutP]] | ||
* [[L-box]] | * [[L-box]] | ||
* [[LicT regulon]] | * [[LicT regulon]], see also [[LicT]] | ||
* [[M-box]] | * [[M-box]] | ||
* [[preQ1 riboswitch]] | * [[preQ1 riboswitch]] | ||
* [[PyrR regulon]] | * [[PyrR regulon]], see also [[PyrR]] | ||
* [[RplT regulon]] | * [[RplT regulon]], see also [[RplT]] | ||
* [[SacT regulon]] | * [[SacT regulon]], see also [[SacT]] | ||
* [[SacY regulon]] | * [[SacY regulon]], see also [[SacY]] | ||
* [[S-box]] | * [[S-box]] | ||
* [[T-box]] | * [[T-box]] | ||
* [[Thi-box]] | * [[Thi-box]] | ||
* [[TRAP regulon]] | * [[TRAP regulon]], see also [[MtrB]] | ||
* [[YdaO riboswitch]] | * [[YdaO riboswitch]] | ||
* [[RNA switch/ other]] | * [[RNA switch/ other]] | ||
| Line 179: | Line 179: | ||
= Additional regulatory mechanisms = | = Additional regulatory mechanisms = | ||
* [[CitB regulon]] | * [[CitB regulon]], see also [[CitB]] | ||
* [[ComN regulon]] | * [[ComN regulon]], see also [[ComN]] | ||
* [[CsrA regulon]] | * [[CsrA regulon]], see also [[CsrA]] | ||
* [[fsrA regulon]] | * [[fsrA regulon]], see also ''[[fsrA]]'' | ||
* [[MifM regulon]] | * [[MifM regulon]], see also [[MifM]] | ||
* [[ratA regulon]] | * [[ratA regulon]], see also ''[[ratA]]'' | ||
* [[SR1 regulon]] | * [[SR1 regulon]], see also [[sr1]] | ||
* [[Stringent response]] | * [[Stringent response]] | ||
Revision as of 07:03, 10 December 2010
Overview on the regulons in B. subtilis
Sigma factors
- SigB regulon, see also SigB
- SigD regulon, see also SigD
- SigE regulon, see also SigE
- SigF regulon, see also SigF
- SigG regulon, see also SigG
- SigH regulon, see also SigH
- SigI regulon, see also SigI
- SigK regulon, see also SigK
- SigL regulon, see also SigL
- SigM regulon, see also SigM
- SigW regulon, see also SigW
- SigX regulon, see also SigX
- SigY regulon, see also SigY
- Xpf regulon, see also Xpf
- YlaC regulon, see also YlaC
- YvrI-YvrHa regulon, see also YvrI and YvrHa
DNA-binding regulators
- Abh regulon, see also Abh
- AbrB regulon, see also AbrB
- AcoR regulon, see also AcoR
- AdaA regulon, see also AdaR
- AdhR regulon, see also AdhR
- AhrC regulon, see also AhrC
- AlsR regulon, see also AlsR
- AnsR regulon, see also AnsR
- AraR regulon, see also AraR
- ArsR regulon, see also ArsR
- AseR regulon, see also AseR
- AzlB regulon, see also AzlB
- BceR regulon, see also BceR
- BirA regulon, see also BirA
- BkdR regulon, see also BkdR
- BltR regulon, see also BltR
- BmrR regulon, see also BmrR
- BsdA regulon, see also BsdA
- Btr regulon, see also Btr
- CatR regulon, see also CatR
- CcpA regulon, see also CcpA
- CcpC regulon, see also CcpC
- CcpN regulon, see also CcpN
- CggR regulon, see also CggR
- CitR regulon, see also CitR
- CitT regulon, see also CitT
- CodY regulon, see also CodY
- ComA regulon, see also ComA
- ComK regulon, see also ComK
- Cso regulon, see also Cso
- CsoR regulon, see also CsoR
- CssR regulon, see also CssR
- CtsR regulon, see also CtsR
- CymR regulon, see also CymR
- CysL regulon, see also CysL
- CzrA regulon, see also CzrA
- DegU regulon, see also DegU
- DeoR regulon, see also DeoR
- DesR regulon, see also DesR
- DnaA regulon, see also DnaA
- ExuR regulon, see also ExuR
- FadR regulon, see also FadR
- FapR regulon, see also FapR
- FatR regulon, see also FatR
- Fnr regulon, see also Fnr
- FruR regulon, see also FruR
- Fur regulon, see also Fur
- GabR regulon, see also GabR
- GerE regulon, see also GerE
- GerR regulon, see also GerR
- GlnL regulon, see also GlnL
- GlnR regulon, see also GlnR
- GltC regulon, see also GltC
- GltR regulon, see also GltR
- GlvR regulon, see also GlvR
- GmuR regulon, see also GmuR
- GntR regulon, see also GntR
- GutR regulon, see also GutR
- HrcA regulon, see also HrcA
- HxlR regulon, see also HxlR
- ImmR regulon, see also ImmR
- IolR regulon, see also IolR
- KdgR regulon, see also KdgR
- KipR regulon, see also KipR
- LacR regulon, see also LacR
- LevR regulon, see also LevR
- LexA regulon, see also LexA
- LiaR regulon, see also LiaR
- LicR regulon, see also LicR
- LmrA regulon, see also LmrA
- LutR regulon, see also LutR
- LytR regulon, see also LytR
- MalR regulon, see also MalR
- ManR regulon, see also ManR
- MdtR regulon, see also MdtR
- MhqR regulon, see also MhqR
- MntR regulon, see also MntR
- Mta regulon, see also Mta
- MtlR regulon, see also MtlR
- NadR regulon, see also NadR
- NatR regulon, see also NatR
- NsrR regulon, see also NsrR
- NtdR regulon, see also NtdR
- OhrR regulon, see also OhrR
- PadR regulon, see also PadR
- PerR regulon, see also PerR
- PhoP regulon, see also PhoP
- PucR regulon, see also PucR
- PurR regulon, see also PurR
- ResD regulon, see also ResD
- Rex regulon, see also Rex
- RghR regulon, see also RghR
- RocR regulon, see also RocR
- Rok regulon, see also Rok
- RsfA regulon, see also RsfA
- SalA regulon, see also SalA
- ScoC regulon, see also ScoC
- SdpR regulon, see also SdpR
- SenS regulon, see also SenS
- SinR regulon, see also SinA
- SlrR regulon, see also SlrR
- Spo0A regulon, see also Spo0A
- SpoIIID regulon, see also SpoIIID
- Spx regulon, see also Spx
- TnrA regulon, see also TnrA
- TreR regulon, see also TreR
- WalR regulon, see also WalR
- Xre regulon, see also Xre
- XylR regulon, see also XylR
- YcbG regulon, see also YcbG
- YclJ regulon, see also YclJ
- YcnK regulon, see also YcnK
- YdfI regulon, see also YdfI
- YesS regulon, see also YesS
- YetL regulon, see also YetL
- YfhP regulon, see also YfhP
- YfmP regulon, see also YfmP
- YkrP regulon, see also YkrP
- YodB regulon, see also YobB
- YofA regulon, see also YofA
- YrkP regulon, see also YrkP
- YtlI regulon, see also YtlI
- YtrA regulon, see also YtrA
- YvoA regulon, see also YvoA
- YvrHb regulon, see also YvrHb
- YwcC regulon, see also YwcC
- YxaF regulon, see also YxaF
- YxdJ regulon, see also YxdJ
- Zur regulon, see also Zur
RNA switches
- A-box
- EAR riboswitch
- FMN-box
- G-box
- GlcT regulon, see also GlcT
- glmS ribozyme
- GlpP regulon, see also GlpP
- HutP regulon, see also HutP
- L-box
- LicT regulon, see also LicT
- M-box
- preQ1 riboswitch
- PyrR regulon, see also PyrR
- RplT regulon, see also RplT
- SacT regulon, see also SacT
- SacY regulon, see also SacY
- S-box
- T-box
- Thi-box
- TRAP regulon, see also MtrB
- YdaO riboswitch
- RNA switch/ other
Additional regulatory mechanisms
- CitB regulon, see also CitB
- ComN regulon, see also ComN
- CsrA regulon, see also CsrA
- fsrA regulon, see also fsrA
- MifM regulon, see also MifM
- ratA regulon, see also ratA
- SR1 regulon, see also sr1
- Stringent response