NcRNA

Parent category	6. Groups of genes
Neighbouring categories	6.1. Essential genes 6.2. Membrane proteins 6.3. GTP-binding proteins 6.4. Phosphoproteins 6.5. Universally conserved proteins 6.6. Poorly characterized/ putative enzymes 6.7. Proteins of unknown function 6.8. Short peptides 6.9. ncRNA 6.10. Pseudogenes
Related categories	RNA switch RNase
Overview on the categories (Excel file) All genes and their categories (Excel file)

6S RNA

• bsrA
• bsrB

tmRNA

• ssrA

small cytoplasmatic RNA (protein secretion)

• scr

RNA component of RNase P

• rnpB

regulatory RNAs

• fsrA
• roxS
• rrcM
• sr1
• SR4

antisense RNAs of toxin/antitoxin systems

• ratA
• as-bsrH
• as-yonT

small RNAs with unknown functions

• bsrC
• bsrD
• bsrE
• bsrF
• bsrH
• bsrI
• csfG
• surA (for yndL)
• surC

Antisense RNAs were predicted for the following genes: PubMed

• bglP
• comER
• ggaA
• jag
• leuA
• mbl
• mtlD
• mutS
• nadB
• ndoA
• opuBD
• sda
• sigA
• wprA
• yddR
• ydiF
• yfhD
• yndL (surA)
• yoeA
• yoqZ
• yqzJ
• ytoA
• ytoI
• ywfM
• ywqA
• yyaQ

Additional noncoding RNAs were predicted for the following intergenic regions: PubMed

• yqaJ-yqaI
• yqaO-yqaN
• yndN-lexA
• ydcO-ydcP
• yolA-yokL
• yokC-yokB
• pbpG-ywhD
• stoA-zosA
• yobI-yobJ
• vmlR-ydgF
• yrzI-yrhG
• yfmI-yfmG
• hxlR-srfAA
• mutL-ymzD
• mntA-menC
• yopM-yopL
• yizD-yjbH
• pps-xynA
• yqdB-yqbM
• yugI-alaT
• trxA-xsa
• ykwD-pbpH
• ymzA-nrdI
• yvcI-trxB
• glmM-glmS
• yhaZ-yhaX
• yneK-cotM
• trpS-oppA
• gerPA-yisI

Reviews

Sabine Brantl, Natalie Jahn
sRNAs in bacterial type I and type III toxin-antitoxin systems.
FEMS Microbiol Rev: 2015, 39(3);413-27
[PubMed:25808661] [WorldCat.org] [DOI] (I p)

Sabine Brantl, Reinhold Brückner
Small regulatory RNAs from low-GC Gram-positive bacteria.
RNA Biol: 2014, 11(5);443-56
[PubMed:24576839] [WorldCat.org] [DOI] (I p)

Sabine Brantl
Acting antisense: plasmid- and chromosome-encoded sRNAs from Gram-positive bacteria.
Future Microbiol: 2012, 7(7);853-71
[PubMed:22827307] [WorldCat.org] [DOI] (I p)

Jens Georg, Wolfgang R Hess
cis-antisense RNA, another level of gene regulation in bacteria.
Microbiol Mol Biol Rev: 2011, 75(2);286-300
[PubMed:21646430] [WorldCat.org] [DOI] (I p)

Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796] [WorldCat.org] [DOI] (I p)

Pascale Romby, Emmanuelle Charpentier
An overview of RNAs with regulatory functions in gram-positive bacteria.
Cell Mol Life Sci: 2010, 67(2);217-37
[PubMed:19859665] [WorldCat.org] [DOI] (I p)

Lauren S Waters, Gisela Storz
Regulatory RNAs in bacteria.
Cell: 2009, 136(4);615-28
[PubMed:19239884] [WorldCat.org] [DOI] (I p)

Sabine Brantl
Bacterial chromosome-encoded small regulatory RNAs.
Future Microbiol: 2009, 4(1);85-103
[PubMed:19207102] [WorldCat.org] [DOI] (I p)