Difference between revisions of "YdgF"

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* '''Catalyzed reaction/ biological activity:'''  
 
* '''Catalyzed reaction/ biological activity:'''  
  
* '''Protein family:''' secondary amino acid transporter
+
* '''Protein family:'''  
 +
** secondary amino acid transporter
 +
** amino acid, polyamine, organocation (APC) family of transporters, [http://www.tcdb.org/search/result.php?tc=2.A.3 TC 2.A.3]
  
 
* '''Paralogous protein(s):''' [[AapA]], [[GabP]], [[HutM]], [[RocC]], [[RocE]], [[YbgF]], [[YbxG]], [[YtnA]], [[YvbW]]
 
* '''Paralogous protein(s):''' [[AapA]], [[GabP]], [[HutM]], [[RocC]], [[RocE]], [[YbgF]], [[YbxG]], [[YtnA]], [[YvbW]]
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* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU05620]
 
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU05620]
  
* '''E.C. number:'''
+
* '''[http://www.tcdb.org/ T.C.] number:''' [http://www.tcdb.org/search/result.php?tc=2.A.3.1.16 2.A.3.1.16]
  
 
=== Additional information===
 
=== Additional information===

Revision as of 12:51, 28 November 2013

  • Description: similar to amino acid permease

Gene name ydgF
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ydgF
MW, pI 50 kDa, 9.337
Gene length, protein length 1374 bp, 458 aa
Immediate neighbours vmlR, dinB
Sequences Protein DNA DNA_with_flanks
Genetic context
YdgF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdgF expression.png















Categories containing this gene/protein

transporters/ other, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU05620

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
    • secondary amino acid transporter
    • amino acid, polyamine, organocation (APC) family of transporters, TC 2.A.3

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References