Difference between revisions of "BkdR"

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(Extended information on the protein)
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Revision as of 16:10, 27 October 2014

Gene name bkdR
Synonyms yqiR
Essential no
Product transcriptional activator (for SigL-dependent promoter))
Function regulation of branched-chain amino acid utilization,

required for survival at low temperatures)

Gene expression levels in SubtiExpress: bkdR

required for survival at low temperatures)

Interactions involving this protein in SubtInteract: BkdR
Metabolic function and regulation of this protein in SubtiPathways:
bkdR
MW, pI 77 kDa, 6.237
Gene length, protein length 2076 bp, 692 aa
Immediate neighbours ptb, yqzF
Sequences Protein DNA DNA_with_flanks
Genetic context
BkdR context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
BkdR expression.png















Categories containing this gene/protein

utilization of amino acids, transcription factors and their control

This gene is a member of the following regulons

CodY regulon

The BkdR regulon:

The gene

Basic information

  • Locus tag: BSU24100

Phenotypes of a mutant

The mutant is cold-sensitive PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • repressed during growth in the presence of branched chain amino acids (CodY) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References