Difference between revisions of "SpoIIR"
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|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[SigE]] activation | |style="background:#ABCDEF;" align="center"|'''Function''' || control of [[SigE]] activation | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU36970 spoIIR] |
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SpoIIR SpoIIR] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SpoIIR SpoIIR] | ||
| Line 24: | Line 24: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywlB]]'', ''[[ywlA]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywlB]]'', ''[[ywlA]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU36970 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU36970 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU36970 Advanced_DNA] |
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|colspan="2" | '''Genetic context''' <br/> [[Image:spoIIR_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:spoIIR_context.gif]] | ||
Revision as of 14:05, 13 May 2013
- Description: required for processing and compartmentalization of pro-SigE
| Gene name | spoIIR |
| Synonyms | ipc-27d, csfX |
| Essential | no |
| Product | morphological chekcpoint for SigE processing |
| Function | control of SigE activation |
| Gene expression levels in SubtiExpress: spoIIR | |
| Interactions involving this protein in SubtInteract: SpoIIR | |
| MW, pI | 25 kDa, 4.737 |
| Gene length, protein length | 672 bp, 224 aa |
| Immediate neighbours | ywlB, ywlA |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
sigma factors and their control, sporulation proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU36970
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: interacts with and activates the pro-SigE protease SpoIIGA in the intermembrane space between the forespore and the mother cell PubMed
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- likely acylated on Thr-27 PubMed
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P39151
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: spoIIR (according to DBTBS)
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
