Difference between revisions of "SpoIVCA"
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|style="background:#ABCDEF;" align="center"| '''Product''' || site-specific DNA recombinase | |style="background:#ABCDEF;" align="center"| '''Product''' || site-specific DNA recombinase | ||
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| − | |style="background:#ABCDEF;" align="center"|'''Function''' || excision of the skin element, creation of the ''[[sigK]]'' gene | + | |style="background:#ABCDEF;" align="center"|'''Function''' || excision of the [[skin element]], creation of the ''[[sigK]]'' gene |
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU25770 spoIVCA] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU25770 spoIVCA] | ||
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
{{SubtiWiki category|[[DNA repair/ recombination]]}}, | {{SubtiWiki category|[[DNA repair/ recombination]]}}, | ||
{{SubtiWiki category|[[sigma factors and their control]]}}, | {{SubtiWiki category|[[sigma factors and their control]]}}, | ||
| − | {{SubtiWiki category|[[sporulation proteins]]}} | + | {{SubtiWiki category|[[sporulation proteins]]}}, |
| + | {{SubtiWiki category|[[Skin element]]}} | ||
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
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=== Additional information=== | === Additional information=== | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIVCA_2653371_2654873_-1 spoIVCA] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoIVCA_2653371_2654873_-1 spoIVCA] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[SigE]] {{PubMed|15699190,2105293}} | + | * '''[[Sigma factor]]:''' [[SigE]] {{PubMed|15699190,2105293}} |
* '''Regulation:''' | * '''Regulation:''' | ||
Revision as of 20:06, 28 April 2013
- Description: site-specific DNA recombinase required for creating the sigK gene (excision of the skin element)
| Gene name | spoIVCA |
| Synonyms | cisA |
| Essential | no |
| Product | site-specific DNA recombinase |
| Function | excision of the skin element, creation of the sigK gene |
| Gene expression levels in SubtiExpress: spoIVCA | |
| MW, pI | 57 kDa, 9.498 |
| Gene length, protein length | 1500 bp, 500 aa |
| Immediate neighbours | spoIVCB, arsC |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
DNA repair/ recombination, sigma factors and their control, sporulation proteins, Skin element
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU25770
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P17867
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: spoIVCA PubMed
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
R Halberg, L Kroos
Sporulation regulatory protein SpoIIID from Bacillus subtilis activates and represses transcription by both mother-cell-specific forms of RNA polymerase.
J Mol Biol: 1994, 243(3);425-36
[PubMed:7966271]
[WorldCat.org]
[DOI]
(P p)
B Kunkel, R Losick, P Stragier
The Bacillus subtilis gene for the development transcription factor sigma K is generated by excision of a dispensable DNA element containing a sporulation recombinase gene.
Genes Dev: 1990, 4(4);525-35
[PubMed:2163341]
[WorldCat.org]
[DOI]
(P p)
T Sato, Y Samori, Y Kobayashi
The cisA cistron of Bacillus subtilis sporulation gene spoIVC encodes a protein homologous to a site-specific recombinase.
J Bacteriol: 1990, 172(2);1092-8
[PubMed:2105293]
[WorldCat.org]
[DOI]
(P p)
B Kunkel, K Sandman, S Panzer, P Youngman, R Losick
The promoter for a sporulation gene in the spoIVC locus of Bacillus subtilis and its use in studies of temporal and spatial control of gene expression.
J Bacteriol: 1988, 170(8);3513-22
[PubMed:2841290]
[WorldCat.org]
[DOI]
(P p)
