Difference between revisions of "NcRNA"
| Line 53: | Line 53: | ||
* ''[[csfG]]'' | * ''[[csfG]]'' | ||
* ''[[rsmY]]'' | * ''[[rsmY]]'' | ||
| − | * ''[[surA]]'' | + | * ''[[surA]]'' (for ''[[yndL]]'') |
* ''[[surC]]'' | * ''[[surC]]'' | ||
| Line 74: | Line 74: | ||
* ''[[ydiF]]'' | * ''[[ydiF]]'' | ||
* ''[[yfhD]]'' | * ''[[yfhD]]'' | ||
| − | * ''[[yndL]]'' | + | * ''[[yndL]]'' (''[[surA]]'') |
* ''[[yoeA]]'' | * ''[[yoeA]]'' | ||
* ''[[yoqZ]]'' | * ''[[yoqZ]]'' | ||
| Line 84: | Line 84: | ||
* ''[[yyaQ]]'' | * ''[[yyaQ]]'' | ||
| + | '''Additional noncoding RNAs were predicted for the following intergenic regions:''' {{PubMed|20525796}} | ||
| + | * ''[[yqaJ]]''-''[[yqaI]]'' | ||
| + | * ''[[yqaO]]''-''[[yqaN]]'' | ||
| + | * ''[[yndN]]''-''[[lexA]]'' | ||
| + | * ''[[ydcO]]''-''[[ydcP]]'' | ||
| + | * ''[[yolA]]''-''[[yokL]]'' | ||
| + | * ''[[yrhK]]''-''[[yrhJ]]'' | ||
| + | * ''[[yokC]]''-''[[yokB]]'' | ||
| + | * ''[[pbpG]]''-''[[ywhD]]'' | ||
| + | * ''[[stoA]]''-''[[zosA]]'' | ||
| + | * ''[[yobI]]''-''[[yobJ]]'' | ||
| + | * ''[[vmlR]]''-''[[ydgF]]'' | ||
| + | * ''[[yrzI]]''-''[[yrhG]]'' | ||
| + | * ''[[yfmI]]''-''[[yfmG]]'' | ||
| + | * ''[[hxlR]]''-''[[srfAA]]'' | ||
| + | * ''[[mutL]]''-''[[ymzD]]'' | ||
| + | * ''[[mntA]]''-''[[menC]]'' | ||
| + | * ''[[yopM]]''-''[[yopL]]'' | ||
| + | * ''[[yizD]]''-''[[yjbH]]'' | ||
| + | * ''[[pps]]''-''[[xynA]]'' | ||
| + | * ''[[yqdB]]''-''[[yqbM]]'' | ||
| + | * ''[[yugI]]''-''[[alaT]]'' | ||
| + | * ''[[trxA]]''-''[[xsa]]'' | ||
| + | * ''[[ykwD]]''-''[[pbpH]]'' | ||
| + | * ''[[ymzA]]''-''[[nrdI]]'' | ||
| + | * ''[[yvcI]]''-''[[trxB]]'' | ||
| + | * ''[[glmM]]''-''[[glmS]]'' | ||
| + | * ''[[yhaZ]]''-''[[yhaX]]'' | ||
| + | * ''[[yneK]]''-''[[cotM]]'' | ||
| + | * ''[[trpS]]''-''[[oppA]]'' | ||
| + | * ''[[gerPA]]''-''[[yisI]]'' | ||
| + | * ''[[dynA]]''-''[[bpsB]]'' | ||
==Reviews== | ==Reviews== | ||
<pubmed> 19239884 19207102 20525796 19859665</pubmed> | <pubmed> 19239884 19207102 20525796 19859665</pubmed> | ||
=Back to [[categories]]= | =Back to [[categories]]= | ||
Revision as of 20:05, 4 May 2011
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Contents
6S RNA
tmRNA
small cytoplasmatic RNA (protein secretion)
RNA component of RNase P
regulatory RNAs
small RNAs with unknown functions
Antisense RNAs were predicted for the following genes: PubMed
- bglP
- comER
- ggaA
- jag
- leuA
- mbl
- mtlD
- mutS
- nadB
- ndoA
- opuBD
- sda
- sigA
- wprA
- yddR
- ydiF
- yfhD
- yndL (surA)
- yoeA
- yoqZ
- yqzJ
- ytoA
- ytoI
- ywfM
- ywqA
- yyaQ
Additional noncoding RNAs were predicted for the following intergenic regions: PubMed
- yqaJ-yqaI
- yqaO-yqaN
- yndN-lexA
- ydcO-ydcP
- yolA-yokL
- yrhK-yrhJ
- yokC-yokB
- pbpG-ywhD
- stoA-zosA
- yobI-yobJ
- vmlR-ydgF
- yrzI-yrhG
- yfmI-yfmG
- hxlR-srfAA
- mutL-ymzD
- mntA-menC
- yopM-yopL
- yizD-yjbH
- pps-xynA
- yqdB-yqbM
- yugI-alaT
- trxA-xsa
- ykwD-pbpH
- ymzA-nrdI
- yvcI-trxB
- glmM-glmS
- yhaZ-yhaX
- yneK-cotM
- trpS-oppA
- gerPA-yisI
- dynA-bpsB
Reviews
Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796]
[WorldCat.org]
[DOI]
(I p)
Pascale Romby, Emmanuelle Charpentier
An overview of RNAs with regulatory functions in gram-positive bacteria.
Cell Mol Life Sci: 2010, 67(2);217-37
[PubMed:19859665]
[WorldCat.org]
[DOI]
(I p)
Lauren S Waters, Gisela Storz
Regulatory RNAs in bacteria.
Cell: 2009, 136(4);615-28
[PubMed:19239884]
[WorldCat.org]
[DOI]
(I p)
Sabine Brantl
Bacterial chromosome-encoded small regulatory RNAs.
Future Microbiol: 2009, 4(1);85-103
[PubMed:19207102]
[WorldCat.org]
[DOI]
(I p)
