Difference between revisions of "NcRNA"
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* 6.10. [[Pseudogenes]] | * 6.10. [[Pseudogenes]] | ||
|Related= | |Related= | ||
| − | + | * [[RNA switch]] | |
| + | * [[RNase]] | ||
|}} | |}} | ||
| Line 39: | Line 40: | ||
* ''[[fsrA]]'' | * ''[[fsrA]]'' | ||
| + | * ''[[roxS]]'' | ||
| + | * ''[[rrcM]]'' | ||
| + | * [[sr1]] | ||
| + | * [[SR4]] | ||
| + | * [[RnaC]] | ||
| + | |||
| + | '''antisense RNAs of toxin/antitoxin systems''' | ||
* ''[[ratA]]'' | * ''[[ratA]]'' | ||
| − | * [[ | + | * ''[[as-bsrH]]'' |
| + | * ''[[as-yonT]]'' | ||
| + | * ''[[SR5]]'' | ||
'''small RNAs with unknown functions''' | '''small RNAs with unknown functions''' | ||
| Line 46: | Line 56: | ||
* ''[[bsrC]]'' | * ''[[bsrC]]'' | ||
* ''[[bsrD]]'' | * ''[[bsrD]]'' | ||
| − | |||
* ''[[bsrF]]'' | * ''[[bsrF]]'' | ||
| − | |||
* ''[[bsrH]]'' | * ''[[bsrH]]'' | ||
* ''[[bsrI]]'' | * ''[[bsrI]]'' | ||
* ''[[csfG]]'' | * ''[[csfG]]'' | ||
| − | * ''[[ | + | * ''[[surA]]'' (for ''[[yndL]]'') |
| − | |||
* ''[[surC]]'' | * ''[[surC]]'' | ||
| + | |||
| + | '''Antisense RNAs were predicted for the following genes:''' {{PubMed|20525796}} | ||
| + | * ''[[bglP]]'' | ||
| + | * ''[[comER]]'' | ||
| + | * ''[[ggaA]]'' | ||
| + | * ''[[jag]]'' | ||
| + | * ''[[leuA]]'' | ||
| + | * ''[[mbl]]'' | ||
| + | * ''[[mtlD]]'' | ||
| + | * ''[[mutS]]'' | ||
| + | * ''[[nadB]]'' | ||
| + | * ''[[ndoA]]'' | ||
| + | * ''[[opuBD]]'' | ||
| + | * ''[[sda]]'' | ||
| + | * ''[[sigA]]'' | ||
| + | * ''[[wprA]]'' | ||
| + | * ''[[yddR]]'' | ||
| + | * ''[[ydiF]]'' | ||
| + | * ''[[yfhD]]'' | ||
| + | * ''[[yndL]]'' (''[[surA]]'') | ||
| + | * ''[[yoeA]]'' | ||
| + | * ''[[yoqZ]]'' | ||
| + | * ''[[yqzJ]]'' | ||
| + | * ''[[ytoA]]'' | ||
| + | * ''[[ytoI]]'' | ||
| + | * ''[[ywfM]]'' | ||
| + | * ''[[ywqA]]'' | ||
| + | * ''[[yyaQ]]'' | ||
| + | |||
| + | '''Additional noncoding RNAs were predicted for the following intergenic regions:''' {{PubMed|20525796}} | ||
| + | * ''[[yqaJ]]''-''[[yqaI]]'' | ||
| + | * ''[[yqaO]]''-''[[yqaN]]'' | ||
| + | * ''[[yndN]]''-''[[lexA]]'' | ||
| + | * ''[[ydcO]]''-''[[ydcP]]'' | ||
| + | * ''[[yolA]]''-''[[yokL]]'' | ||
| + | * ''[[yokC]]''-''[[yokB]]'' | ||
| + | * ''[[pbpG]]''-''[[ywhD]]'' | ||
| + | * ''[[stoA]]''-''[[zosA]]'' | ||
| + | * ''[[yobI]]''-''[[yobJ]]'' | ||
| + | * ''[[vmlR]]''-''[[ydgF]]'' | ||
| + | * ''[[yrzI]]''-''[[yrhG]]'' | ||
| + | * ''[[yfmI]]''-''[[yfmG]]'' | ||
| + | * ''[[hxlR]]''-''[[srfAA]]'' | ||
| + | * ''[[mutL]]''-''[[ymzD]]'' | ||
| + | * ''[[mntA]]''-''[[menC]]'' | ||
| + | * ''[[yopM]]''-''[[yopL]]'' | ||
| + | * ''[[yizD]]''-''[[yjbH]]'' | ||
| + | * ''[[pps]]''-''[[xynA]]'' | ||
| + | * ''[[yqdB]]''-''[[yqbM]]'' | ||
| + | * ''[[yugI]]''-''[[alaT]]'' | ||
| + | * ''[[trxA]]''-''[[xsa]]'' | ||
| + | * ''[[ykwD]]''-''[[pbpH]]'' | ||
| + | * ''[[ymzA]]''-''[[nrdI]]'' | ||
| + | * ''[[yvcI]]''-''[[trxB]]'' | ||
| + | * ''[[glmM]]''-''[[glmS]]'' | ||
| + | * ''[[yhaZ]]''-''[[yhaX]]'' | ||
| + | * ''[[yneK]]''-''[[cotM]]'' | ||
| + | * ''[[trpS]]''-''[[oppA]]'' | ||
| + | * ''[[gerPA]]''-''[[yisI]]'' | ||
==Reviews== | ==Reviews== | ||
| − | <pubmed> 19239884 19207102 20525796 19859665</pubmed> | + | <pubmed> 19239884 19207102 20525796 19859665 21646430 22827307 24576839 25808661 27784798</pubmed> |
| + | |||
| + | ==Important original publications== | ||
| + | <pubmed>22383849</pubmed> | ||
=Back to [[categories]]= | =Back to [[categories]]= | ||
Latest revision as of 15:40, 28 October 2016
| Parent category | |
| Neighbouring categories |
|
| Related categories | |
6S RNA
tmRNA
small cytoplasmatic RNA (protein secretion)
RNA component of RNase P
regulatory RNAs
antisense RNAs of toxin/antitoxin systems
small RNAs with unknown functions
Antisense RNAs were predicted for the following genes: PubMed
- bglP
- comER
- ggaA
- jag
- leuA
- mbl
- mtlD
- mutS
- nadB
- ndoA
- opuBD
- sda
- sigA
- wprA
- yddR
- ydiF
- yfhD
- yndL (surA)
- yoeA
- yoqZ
- yqzJ
- ytoA
- ytoI
- ywfM
- ywqA
- yyaQ
Additional noncoding RNAs were predicted for the following intergenic regions: PubMed
- yqaJ-yqaI
- yqaO-yqaN
- yndN-lexA
- ydcO-ydcP
- yolA-yokL
- yokC-yokB
- pbpG-ywhD
- stoA-zosA
- yobI-yobJ
- vmlR-ydgF
- yrzI-yrhG
- yfmI-yfmG
- hxlR-srfAA
- mutL-ymzD
- mntA-menC
- yopM-yopL
- yizD-yjbH
- pps-xynA
- yqdB-yqbM
- yugI-alaT
- trxA-xsa
- ykwD-pbpH
- ymzA-nrdI
- yvcI-trxB
- glmM-glmS
- yhaZ-yhaX
- yneK-cotM
- trpS-oppA
- gerPA-yisI
Reviews
Ruben A T Mars, Pierre Nicolas, Emma L Denham, Jan Maarten van Dijl
Regulatory RNAs in Bacillus subtilis: a Gram-Positive Perspective on Bacterial RNA-Mediated Regulation of Gene Expression.
Microbiol Mol Biol Rev: 2016, 80(4);1029-1057
[PubMed:27784798]
[WorldCat.org]
[DOI]
(I e)
Sabine Brantl, Natalie Jahn
sRNAs in bacterial type I and type III toxin-antitoxin systems.
FEMS Microbiol Rev: 2015, 39(3);413-27
[PubMed:25808661]
[WorldCat.org]
[DOI]
(I p)
Sabine Brantl, Reinhold Brückner
Small regulatory RNAs from low-GC Gram-positive bacteria.
RNA Biol: 2014, 11(5);443-56
[PubMed:24576839]
[WorldCat.org]
[DOI]
(I p)
Sabine Brantl
Acting antisense: plasmid- and chromosome-encoded sRNAs from Gram-positive bacteria.
Future Microbiol: 2012, 7(7);853-71
[PubMed:22827307]
[WorldCat.org]
[DOI]
(I p)
Jens Georg, Wolfgang R Hess
cis-antisense RNA, another level of gene regulation in bacteria.
Microbiol Mol Biol Rev: 2011, 75(2);286-300
[PubMed:21646430]
[WorldCat.org]
[DOI]
(I p)
Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796]
[WorldCat.org]
[DOI]
(I p)
Pascale Romby, Emmanuelle Charpentier
An overview of RNAs with regulatory functions in gram-positive bacteria.
Cell Mol Life Sci: 2010, 67(2);217-37
[PubMed:19859665]
[WorldCat.org]
[DOI]
(I p)
Lauren S Waters, Gisela Storz
Regulatory RNAs in bacteria.
Cell: 2009, 136(4);615-28
[PubMed:19239884]
[WorldCat.org]
[DOI]
(I p)
Sabine Brantl
Bacterial chromosome-encoded small regulatory RNAs.
Future Microbiol: 2009, 4(1);85-103
[PubMed:19207102]
[WorldCat.org]
[DOI]
(I p)
Important original publications
