Difference between revisions of "Skin element"
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* 5.1.2. [[SPß prophage]] | * 5.1.2. [[SPß prophage]] | ||
* 5.1.3. [[Skin element]] | * 5.1.3. [[Skin element]] | ||
| − | * 5.1.4. [[Phage-related functions]] | + | * 5.1.4. [[Prophage 1]] |
| + | * 5.1.5. [[Prophage 3]] | ||
| + | * 5.1.6. [[Phage-related functions]] | ||
|Related= | |Related= | ||
| − | + | * [[SknR regulon]] | |
|}} | |}} | ||
| + | |||
| + | == Important note== | ||
| + | * In 168, the Skin element disrupts the ''[[sigK]]'' gene | ||
| + | * A strain devoid of the [[Skin element]] (1A884) is available at the [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A884&Search=1A884 BGSC], {{PubMed|9537360}} | ||
| + | * A strain devoid of [[PBSX prophage]] , [[SP-beta prophage]] and the [[Skin element]] (TF8A) as well as a strain devoid of all six prophages of the 168 genome (D6) is available in [[Jan Maarten van Dijl]]'s lab {{PubMed|12949151}} | ||
| + | * deletion of the skin element results in an increased rate of spontaneous [[germination]] due to lower expression of [[GerE]] {{PubMed|26279233}} | ||
== Genes in this functional category == | == Genes in this functional category == | ||
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* ''[[arsC]]'' | * ''[[arsC]]'' | ||
* ''[[arsR]]'' | * ''[[arsR]]'' | ||
| + | * ''[[as-bsrH]]'' | ||
| + | *'' [[bsrH]]'' | ||
* ''[[cwlA]]'' | * ''[[cwlA]]'' | ||
* ''[[phrE]]'' | * ''[[phrE]]'' | ||
* ''[[rapE]]'' | * ''[[rapE]]'' | ||
| + | * ''[[ratA]]'' | ||
* ''[[sknR]]'' | * ''[[sknR]]'' | ||
| + | * ''[[spoIVCA]]'' | ||
* ''[[txpA]]'' | * ''[[txpA]]'' | ||
* ''[[yqaB]]'' | * ''[[yqaB]]'' | ||
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* ''[[yqzN]]'' | * ''[[yqzN]]'' | ||
* ''[[yqzO]]'' | * ''[[yqzO]]'' | ||
| + | |||
| + | ==Key publications== | ||
| + | <pubmed> 20889742 9537360 8969508 8760915 7704261 12949151 </pubmed> | ||
=Back to [[categories]]= | =Back to [[categories]]= | ||
Latest revision as of 15:19, 19 August 2015
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Contents
Important note
- In 168, the Skin element disrupts the sigK gene
- A strain devoid of the Skin element (1A884) is available at the BGSC, PubMed
- A strain devoid of PBSX prophage , SP-beta prophage and the Skin element (TF8A) as well as a strain devoid of all six prophages of the 168 genome (D6) is available in Jan Maarten van Dijl's lab PubMed
- deletion of the skin element results in an increased rate of spontaneous germination due to lower expression of GerE PubMed
Genes in this functional category
- arsB
- arsC
- arsR
- as-bsrH
- bsrH
- cwlA
- phrE
- rapE
- ratA
- sknR
- spoIVCA
- txpA
- yqaB
- yqaC
- yqaD
- yqaF
- yqaG
- yqaH
- yqaI
- yqaJ
- yqaK
- yqaL
- yqaM
- yqaN
- yqaO
- yqaP
- yqaQ
- yqaR
- yqaS
- yqaT
- yqbA
- yqbB
- yqbC
- yqbD
- yqbE
- yqbF
- yqbG
- yqbH
- yqbI
- yqbJ
- yqbK
- yqbM
- yqbN/1
- yqbN/2
- yqbO
- yqbP
- yqbQ
- yqbR
- yqbS
- yqbT
- yqcA
- yqcB
- yqcC
- yqcD
- yqcE
- yqcF
- yqcG
- yqcI
- yqcK
- yqdA
- yqxG
- yqxH
- yqxI
- yqxJ
- yqzI
- yqzN
- yqzO
Key publications
Tatsu Kimura, Yukie Amaya, Kazuo Kobayashi, Naotake Ogasawara, Tsutomu Sato
Repression of sigK intervening (skin) element gene expression by the CI-like protein SknR and effect of SknR depletion on growth of Bacillus subtilis cells.
J Bacteriol: 2010, 192(23);6209-16
[PubMed:20889742]
[WorldCat.org]
[DOI]
(I p)
Helga Westers, Ronald Dorenbos, Jan Maarten van Dijl, Jorrit Kabel, Tony Flanagan, Kevin M Devine, Florence Jude, Simone J Seror, Aaron C Beekman, Elise Darmon, Caroline Eschevins, Anne de Jong, Sierd Bron, Oscar P Kuipers, Alessandra M Albertini, Haike Antelmann, Michael Hecker, Nicola Zamboni, Uwe Sauer, Claude Bruand, Dusko S Ehrlich, Juan C Alonso, Margarita Salas, Wim J Quax
Genome engineering reveals large dispensable regions in Bacillus subtilis.
Mol Biol Evol: 2003, 20(12);2076-90
[PubMed:12949151]
[WorldCat.org]
[DOI]
(P p)
T Sato, Y Kobayashi
The ars operon in the skin element of Bacillus subtilis confers resistance to arsenate and arsenite.
J Bacteriol: 1998, 180(7);1655-61
[PubMed:9537360]
[WorldCat.org]
[DOI]
(P p)
M Mizuno, S Masuda, K Takemaru, S Hosono, T Sato, M Takeuchi, Y Kobayashi
Systematic sequencing of the 283 kb 210 degrees-232 degrees region of the Bacillus subtilis genome containing the skin element and many sporulation genes.
Microbiology (Reading): 1996, 142 ( Pt 11);3103-11
[PubMed:8969508]
[WorldCat.org]
[DOI]
(P p)
S Krogh, M O'Reilly, N Nolan, K M Devine
The phage-like element PBSX and part of the skin element, which are resident at different locations on the Bacillus subtilis chromosome, are highly homologous.
Microbiology (Reading): 1996, 142 ( Pt 8);2031-40
[PubMed:8760915]
[WorldCat.org]
[DOI]
(P p)
K Takemaru, M Mizuno, T Sato, M Takeuchi, Y Kobayashi
Complete nucleotide sequence of a skin element excised by DNA rearrangement during sporulation in Bacillus subtilis.
Microbiology (Reading): 1995, 141 ( Pt 2);323-7
[PubMed:7704261]
[WorldCat.org]
[DOI]
(P p)
