Difference between revisions of "NcRNA"
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* 6.10. [[Pseudogenes]] | * 6.10. [[Pseudogenes]] | ||
|Related= | |Related= | ||
| − | + | * [[RNA switch]] | |
| + | * [[RNase]] | ||
|}} | |}} | ||
| Line 39: | Line 40: | ||
* ''[[fsrA]]'' | * ''[[fsrA]]'' | ||
| + | * ''[[roxS]]'' | ||
| + | * ''[[rrcM]]'' | ||
| + | * [[sr1]] | ||
| + | * [[SR4]] | ||
| + | * [[RnaC]] | ||
| + | |||
| + | '''antisense RNAs of toxin/antitoxin systems''' | ||
* ''[[ratA]]'' | * ''[[ratA]]'' | ||
| − | * [[ | + | * ''[[as-bsrH]]'' |
| + | * ''[[as-yonT]]'' | ||
| + | * ''[[SR5]]'' | ||
'''small RNAs with unknown functions''' | '''small RNAs with unknown functions''' | ||
| Line 46: | Line 56: | ||
* ''[[bsrC]]'' | * ''[[bsrC]]'' | ||
* ''[[bsrD]]'' | * ''[[bsrD]]'' | ||
| − | |||
* ''[[bsrF]]'' | * ''[[bsrF]]'' | ||
| − | |||
* ''[[bsrH]]'' | * ''[[bsrH]]'' | ||
* ''[[bsrI]]'' | * ''[[bsrI]]'' | ||
| − | * ''[[ | + | * ''[[csfG]]'' |
| − | * ''[[surA]]'' | + | * ''[[surA]]'' (for ''[[yndL]]'') |
* ''[[surC]]'' | * ''[[surC]]'' | ||
| + | |||
| + | '''Antisense RNAs were predicted for the following genes:''' {{PubMed|20525796}} | ||
| + | * ''[[bglP]]'' | ||
| + | * ''[[comER]]'' | ||
| + | * ''[[ggaA]]'' | ||
| + | * ''[[jag]]'' | ||
| + | * ''[[leuA]]'' | ||
| + | * ''[[mbl]]'' | ||
| + | * ''[[mtlD]]'' | ||
| + | * ''[[mutS]]'' | ||
| + | * ''[[nadB]]'' | ||
| + | * ''[[ndoA]]'' | ||
| + | * ''[[opuBD]]'' | ||
| + | * ''[[sda]]'' | ||
| + | * ''[[sigA]]'' | ||
| + | * ''[[wprA]]'' | ||
| + | * ''[[yddR]]'' | ||
| + | * ''[[ydiF]]'' | ||
| + | * ''[[yfhD]]'' | ||
| + | * ''[[yndL]]'' (''[[surA]]'') | ||
| + | * ''[[yoeA]]'' | ||
| + | * ''[[yoqZ]]'' | ||
| + | * ''[[yqzJ]]'' | ||
| + | * ''[[ytoA]]'' | ||
| + | * ''[[ytoI]]'' | ||
| + | * ''[[ywfM]]'' | ||
| + | * ''[[ywqA]]'' | ||
| + | * ''[[yyaQ]]'' | ||
| + | |||
| + | '''Additional noncoding RNAs were predicted for the following intergenic regions:''' {{PubMed|20525796}} | ||
| + | * ''[[yqaJ]]''-''[[yqaI]]'' | ||
| + | * ''[[yqaO]]''-''[[yqaN]]'' | ||
| + | * ''[[yndN]]''-''[[lexA]]'' | ||
| + | * ''[[ydcO]]''-''[[ydcP]]'' | ||
| + | * ''[[yolA]]''-''[[yokL]]'' | ||
| + | * ''[[yokC]]''-''[[yokB]]'' | ||
| + | * ''[[pbpG]]''-''[[ywhD]]'' | ||
| + | * ''[[stoA]]''-''[[zosA]]'' | ||
| + | * ''[[yobI]]''-''[[yobJ]]'' | ||
| + | * ''[[vmlR]]''-''[[ydgF]]'' | ||
| + | * ''[[yrzI]]''-''[[yrhG]]'' | ||
| + | * ''[[yfmI]]''-''[[yfmG]]'' | ||
| + | * ''[[hxlR]]''-''[[srfAA]]'' | ||
| + | * ''[[mutL]]''-''[[ymzD]]'' | ||
| + | * ''[[mntA]]''-''[[menC]]'' | ||
| + | * ''[[yopM]]''-''[[yopL]]'' | ||
| + | * ''[[yizD]]''-''[[yjbH]]'' | ||
| + | * ''[[pps]]''-''[[xynA]]'' | ||
| + | * ''[[yqdB]]''-''[[yqbM]]'' | ||
| + | * ''[[yugI]]''-''[[alaT]]'' | ||
| + | * ''[[trxA]]''-''[[xsa]]'' | ||
| + | * ''[[ykwD]]''-''[[pbpH]]'' | ||
| + | * ''[[ymzA]]''-''[[nrdI]]'' | ||
| + | * ''[[yvcI]]''-''[[trxB]]'' | ||
| + | * ''[[glmM]]''-''[[glmS]]'' | ||
| + | * ''[[yhaZ]]''-''[[yhaX]]'' | ||
| + | * ''[[yneK]]''-''[[cotM]]'' | ||
| + | * ''[[trpS]]''-''[[oppA]]'' | ||
| + | * ''[[gerPA]]''-''[[yisI]]'' | ||
==Reviews== | ==Reviews== | ||
| − | <pubmed> 19239884 19207102 20525796 19859665</pubmed> | + | <pubmed> 19239884 19207102 20525796 19859665 21646430 22827307 24576839 25808661 27784798</pubmed> |
| + | |||
| + | ==Important original publications== | ||
| + | <pubmed>22383849</pubmed> | ||
| + | =Back to [[categories]]= | ||
Latest revision as of 15:40, 28 October 2016
| Parent category | |
| Neighbouring categories |
|
| Related categories | |
6S RNA
tmRNA
small cytoplasmatic RNA (protein secretion)
RNA component of RNase P
regulatory RNAs
antisense RNAs of toxin/antitoxin systems
small RNAs with unknown functions
Antisense RNAs were predicted for the following genes: PubMed
- bglP
- comER
- ggaA
- jag
- leuA
- mbl
- mtlD
- mutS
- nadB
- ndoA
- opuBD
- sda
- sigA
- wprA
- yddR
- ydiF
- yfhD
- yndL (surA)
- yoeA
- yoqZ
- yqzJ
- ytoA
- ytoI
- ywfM
- ywqA
- yyaQ
Additional noncoding RNAs were predicted for the following intergenic regions: PubMed
- yqaJ-yqaI
- yqaO-yqaN
- yndN-lexA
- ydcO-ydcP
- yolA-yokL
- yokC-yokB
- pbpG-ywhD
- stoA-zosA
- yobI-yobJ
- vmlR-ydgF
- yrzI-yrhG
- yfmI-yfmG
- hxlR-srfAA
- mutL-ymzD
- mntA-menC
- yopM-yopL
- yizD-yjbH
- pps-xynA
- yqdB-yqbM
- yugI-alaT
- trxA-xsa
- ykwD-pbpH
- ymzA-nrdI
- yvcI-trxB
- glmM-glmS
- yhaZ-yhaX
- yneK-cotM
- trpS-oppA
- gerPA-yisI
Reviews
Important original publications
Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L Denham, Mark J Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, Colin R Harwood, Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, Peter Lewis, Wolfram Liebermeister, Anika March, Ruben A T Mars, Priyanka Nannapaneni, David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, Praveen K Sappa, Franck Samson, Marc Schaffer, Benno Schwikowski, Leif Steil, Jörg Stülke, Thomas Wiegert, Kevin M Devine, Anthony J Wilkinson, Jan Maarten van Dijl, Michael Hecker, Uwe Völker, Philippe Bessières, Philippe Noirot
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Science: 2012, 335(6072);1103-6
[PubMed:22383849]
[WorldCat.org]
[DOI]
(I p)
