Difference between revisions of "NcRNA"

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* 6.10. [[Pseudogenes]]
 
* 6.10. [[Pseudogenes]]
 
|Related=
 
|Related=
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none
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* [[RNA switch]]
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* [[RNase]]
 
|}}
 
|}}
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__TOC__
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<br><br><br>
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'''6S RNA'''
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* ''[[bsrA]]''
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* ''[[bsrB]]''
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'''tmRNA'''
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* ''[[ssrA]]''
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'''small cytoplasmatic RNA (protein secretion)'''
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*''[[scr]]''
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'''RNA component of RNase P'''
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* ''[[rnpB]]''
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'''regulatory RNAs'''
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* ''[[fsrA]]''
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* ''[[roxS]]''
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* ''[[rrcM]]''
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* [[sr1]]
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* [[SR4]]
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* [[RnaC]]
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'''antisense RNAs of toxin/antitoxin systems'''
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* ''[[ratA]]''
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* ''[[as-bsrH]]''
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* ''[[as-yonT]]''
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* ''[[SR5]]''
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'''small RNAs with unknown functions'''
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* ''[[bsrC]]''
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* ''[[bsrD]]''
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* ''[[bsrF]]''
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* ''[[bsrH]]''
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* ''[[bsrI]]''
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* ''[[csfG]]''
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* ''[[surA]]'' (for ''[[yndL]]'')
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* ''[[surC]]''
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'''Antisense RNAs were predicted for the following genes:''' {{PubMed|20525796}}
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* ''[[bglP]]''
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* ''[[comER]]''
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* ''[[ggaA]]''
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* ''[[jag]]''
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* ''[[leuA]]''
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* ''[[mbl]]''
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* ''[[mtlD]]''
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* ''[[mutS]]''
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* ''[[nadB]]''
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* ''[[ndoA]]''
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* ''[[opuBD]]''
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* ''[[sda]]''
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* ''[[sigA]]''
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* ''[[wprA]]''
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* ''[[yddR]]''
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* ''[[ydiF]]''
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* ''[[yfhD]]''
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* ''[[yndL]]'' (''[[surA]]'')
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* ''[[yoeA]]''
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* ''[[yoqZ]]''
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* ''[[yqzJ]]''
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* ''[[ytoA]]''
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* ''[[ytoI]]''
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* ''[[ywfM]]''
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* ''[[ywqA]]''
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* ''[[yyaQ]]''
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'''Additional noncoding RNAs were predicted for the following intergenic regions:''' {{PubMed|20525796}}
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* ''[[yqaJ]]''-''[[yqaI]]''
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* ''[[yqaO]]''-''[[yqaN]]''
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* ''[[yndN]]''-''[[lexA]]''
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* ''[[ydcO]]''-''[[ydcP]]''
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* ''[[yolA]]''-''[[yokL]]''
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* ''[[yokC]]''-''[[yokB]]''
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* ''[[pbpG]]''-''[[ywhD]]''
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* ''[[stoA]]''-''[[zosA]]''
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* ''[[yobI]]''-''[[yobJ]]''
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* ''[[vmlR]]''-''[[ydgF]]''
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* ''[[yrzI]]''-''[[yrhG]]''
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* ''[[yfmI]]''-''[[yfmG]]''
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* ''[[hxlR]]''-''[[srfAA]]''
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* ''[[mutL]]''-''[[ymzD]]''
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* ''[[mntA]]''-''[[menC]]''
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* ''[[yopM]]''-''[[yopL]]''
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* ''[[yizD]]''-''[[yjbH]]''
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* ''[[pps]]''-''[[xynA]]''
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* ''[[yqdB]]''-''[[yqbM]]''
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* ''[[yugI]]''-''[[alaT]]''
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* ''[[trxA]]''-''[[xsa]]''
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* ''[[ykwD]]''-''[[pbpH]]''
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* ''[[ymzA]]''-''[[nrdI]]''
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* ''[[yvcI]]''-''[[trxB]]''
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* ''[[glmM]]''-''[[glmS]]''
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* ''[[yhaZ]]''-''[[yhaX]]''
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* ''[[yneK]]''-''[[cotM]]''
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* ''[[trpS]]''-''[[oppA]]''
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* ''[[gerPA]]''-''[[yisI]]''
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==Reviews==
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<pubmed> 19239884 19207102 20525796 19859665 21646430 22827307 24576839 25808661 27784798</pubmed>
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 +
==Important original publications==
 +
<pubmed>22383849</pubmed>
 +
=Back to [[categories]]=

Latest revision as of 15:40, 28 October 2016

Parent category
Neighbouring categories
Related categories




6S RNA

tmRNA

small cytoplasmatic RNA (protein secretion)

RNA component of RNase P

regulatory RNAs

antisense RNAs of toxin/antitoxin systems

small RNAs with unknown functions

Antisense RNAs were predicted for the following genes: PubMed

Additional noncoding RNAs were predicted for the following intergenic regions: PubMed

Reviews

Ruben A T Mars, Pierre Nicolas, Emma L Denham, Jan Maarten van Dijl
Regulatory RNAs in Bacillus subtilis: a Gram-Positive Perspective on Bacterial RNA-Mediated Regulation of Gene Expression.
Microbiol Mol Biol Rev: 2016, 80(4);1029-1057
[PubMed:27784798] [WorldCat.org] [DOI] (I e)

Sabine Brantl, Natalie Jahn
sRNAs in bacterial type I and type III toxin-antitoxin systems.
FEMS Microbiol Rev: 2015, 39(3);413-27
[PubMed:25808661] [WorldCat.org] [DOI] (I p)

Sabine Brantl, Reinhold Brückner
Small regulatory RNAs from low-GC Gram-positive bacteria.
RNA Biol: 2014, 11(5);443-56
[PubMed:24576839] [WorldCat.org] [DOI] (I p)

Sabine Brantl
Acting antisense: plasmid- and chromosome-encoded sRNAs from Gram-positive bacteria.
Future Microbiol: 2012, 7(7);853-71
[PubMed:22827307] [WorldCat.org] [DOI] (I p)

Jens Georg, Wolfgang R Hess
cis-antisense RNA, another level of gene regulation in bacteria.
Microbiol Mol Biol Rev: 2011, 75(2);286-300
[PubMed:21646430] [WorldCat.org] [DOI] (I p)

Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796] [WorldCat.org] [DOI] (I p)

Pascale Romby, Emmanuelle Charpentier
An overview of RNAs with regulatory functions in gram-positive bacteria.
Cell Mol Life Sci: 2010, 67(2);217-37
[PubMed:19859665] [WorldCat.org] [DOI] (I p)

Lauren S Waters, Gisela Storz
Regulatory RNAs in bacteria.
Cell: 2009, 136(4);615-28
[PubMed:19239884] [WorldCat.org] [DOI] (I p)

Sabine Brantl
Bacterial chromosome-encoded small regulatory RNAs.
Future Microbiol: 2009, 4(1);85-103
[PubMed:19207102] [WorldCat.org] [DOI] (I p)


Important original publications

Back to categories

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