Difference between revisions of "NcRNA"

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(Created page with "{{CategoryTree2 |Parents= * 6. Groups of genes |Neighbours= * 6.1. Ribosomal RNA * 6.2. tRNA * 6.3. ncRNA * 6.4. Short peptides * 6.5. [[GTP-binding proteins]...")
 
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* 6. [[Groups of genes]]
 
* 6. [[Groups of genes]]
 
|Neighbours=
 
|Neighbours=
−
* 6.1. [[Ribosomal RNA]]
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* 6.1. [[Essential genes]]
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* 6.2. [[tRNA]]
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* 6.2. [[Membrane proteins]]
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* 6.3. [[ncRNA]]
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* 6.3. [[GTP-binding proteins]]
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* 6.4. [[Short peptides]]
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* 6.4. [[Phosphoproteins]]
−
* 6.5. [[GTP-binding proteins]]
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* 6.5. [[Universally conserved proteins]]
−
* 6.6. [[Phosphoproteins]]
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* 6.6. [[Poorly characterized/ putative enzymes]]
−
* 6.7. [[Universally conserved proteins]]
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* 6.7. [[Proteins of unknown function]]
−
* 6.8. [[Membrane proteins]]
+
* 6.8. [[Short peptides]]
−
* 6.9. [[Essential genes]]
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* 6.9. [[ncRNA]]
 
* 6.10. [[Pseudogenes]]
 
* 6.10. [[Pseudogenes]]
−
* 6.11. [[Poorly characterized/ putative enzymes]]
 
−
* 6.12. [[Proteins of unknown function]]
 
 
|Related=
 
|Related=
−
none
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* [[RNA switch]]
 +
* [[RNase]]
 
|}}
 
|}}
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 +
__TOC__
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<br><br><br>
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'''6S RNA'''
 +
 +
* ''[[bsrA]]''
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* ''[[bsrB]]''
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'''tmRNA'''
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* ''[[ssrA]]''
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'''small cytoplasmatic RNA (protein secretion)'''
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*''[[scr]]''
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'''RNA component of RNase P'''
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* ''[[rnpB]]''
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'''regulatory RNAs'''
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* ''[[fsrA]]''
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* ''[[roxS]]''
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* ''[[rrcM]]''
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* [[sr1]]
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* [[SR4]]
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* [[RnaC]]
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'''antisense RNAs of toxin/antitoxin systems'''
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* ''[[ratA]]''
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* ''[[as-bsrH]]''
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* ''[[as-yonT]]''
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* ''[[SR5]]''
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'''small RNAs with unknown functions'''
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* ''[[bsrC]]''
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* ''[[bsrD]]''
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* ''[[bsrF]]''
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* ''[[bsrH]]''
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* ''[[bsrI]]''
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* ''[[csfG]]''
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* ''[[surA]]'' (for ''[[yndL]]'')
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* ''[[surC]]''
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'''Antisense RNAs were predicted for the following genes:''' {{PubMed|20525796}}
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* ''[[bglP]]''
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* ''[[comER]]''
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* ''[[ggaA]]''
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* ''[[jag]]''
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* ''[[leuA]]''
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* ''[[mbl]]''
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* ''[[mtlD]]''
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* ''[[mutS]]''
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* ''[[nadB]]''
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* ''[[ndoA]]''
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* ''[[opuBD]]''
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* ''[[sda]]''
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* ''[[sigA]]''
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* ''[[wprA]]''
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* ''[[yddR]]''
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* ''[[ydiF]]''
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* ''[[yfhD]]''
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* ''[[yndL]]'' (''[[surA]]'')
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* ''[[yoeA]]''
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* ''[[yoqZ]]''
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* ''[[yqzJ]]''
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* ''[[ytoA]]''
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* ''[[ytoI]]''
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* ''[[ywfM]]''
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* ''[[ywqA]]''
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* ''[[yyaQ]]''
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'''Additional noncoding RNAs were predicted for the following intergenic regions:''' {{PubMed|20525796}}
 +
* ''[[yqaJ]]''-''[[yqaI]]''
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* ''[[yqaO]]''-''[[yqaN]]''
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* ''[[yndN]]''-''[[lexA]]''
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* ''[[ydcO]]''-''[[ydcP]]''
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* ''[[yolA]]''-''[[yokL]]''
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* ''[[yokC]]''-''[[yokB]]''
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* ''[[pbpG]]''-''[[ywhD]]''
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* ''[[stoA]]''-''[[zosA]]''
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* ''[[yobI]]''-''[[yobJ]]''
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* ''[[vmlR]]''-''[[ydgF]]''
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* ''[[yrzI]]''-''[[yrhG]]''
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* ''[[yfmI]]''-''[[yfmG]]''
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* ''[[hxlR]]''-''[[srfAA]]''
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* ''[[mutL]]''-''[[ymzD]]''
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* ''[[mntA]]''-''[[menC]]''
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* ''[[yopM]]''-''[[yopL]]''
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* ''[[yizD]]''-''[[yjbH]]''
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* ''[[pps]]''-''[[xynA]]''
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* ''[[yqdB]]''-''[[yqbM]]''
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* ''[[yugI]]''-''[[alaT]]''
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* ''[[trxA]]''-''[[xsa]]''
 +
* ''[[ykwD]]''-''[[pbpH]]''
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* ''[[ymzA]]''-''[[nrdI]]''
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* ''[[yvcI]]''-''[[trxB]]''
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* ''[[glmM]]''-''[[glmS]]''
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* ''[[yhaZ]]''-''[[yhaX]]''
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* ''[[yneK]]''-''[[cotM]]''
 +
* ''[[trpS]]''-''[[oppA]]''
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* ''[[gerPA]]''-''[[yisI]]''
 +
 +
==Reviews==
 +
<pubmed> 19239884 19207102 20525796 19859665 21646430 22827307 24576839 25808661 27784798</pubmed>
 +
 +
==Important original publications==
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<pubmed>22383849</pubmed>
 +
=Back to [[categories]]=

Latest revision as of 15:40, 28 October 2016

Parent category
Neighbouring categories
Related categories




6S RNA

tmRNA

small cytoplasmatic RNA (protein secretion)

RNA component of RNase P

regulatory RNAs

antisense RNAs of toxin/antitoxin systems

small RNAs with unknown functions

Antisense RNAs were predicted for the following genes: PubMed

Additional noncoding RNAs were predicted for the following intergenic regions: PubMed

Reviews


Important original publications

Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L Denham, Mark J Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, Colin R Harwood, Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, Peter Lewis, Wolfram Liebermeister, Anika March, Ruben A T Mars, Priyanka Nannapaneni, David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, Praveen K Sappa, Franck Samson, Marc Schaffer, Benno Schwikowski, Leif Steil, Jörg Stülke, Thomas Wiegert, Kevin M Devine, Anthony J Wilkinson, Jan Maarten van Dijl, Michael Hecker, Uwe Völker, Philippe Bessières, Philippe Noirot
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Science: 2012, 335(6072);1103-6
[PubMed:22383849] [WorldCat.org] [DOI] (I p)

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