YjcG

• Description: putative 2'-5' RNA-ligase
  
  

Gene name	yjcG
Synonyms
Essential	no
Product	putative 2'-5' RNA-ligase
Function	RNA metabolism
Gene expression levels in SubtiExpress: yjcG
MW, pI	19 kDa, 5.572
Gene length, protein length	513 bp, 171 aa
Immediate neighbours	yjcF, yjcH
Sequences	Protein DNA DNA_with_flanks
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

poorly characterized/ putative enzymes

The gene

Basic information

• Locus tag: BSU11850

Database entries

• BsubCyc: BSU11850

• DBTBS entry: no entry

• SubtiList entry: [1]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:

• Protein family: UPF0477 family (according to Swiss-Prot)

• Paralogous protein(s): YtlP

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:

• Localization:

Database entries

• BsubCyc: BSU11850

• Structure: 2D4G

• UniProt: O31629

• KEGG entry: [2]

• E.C. number:

Expression and regulation

• Operon:

• Expression browser: yjcG PubMed

• Sigma factor:

• Regulation: repressed by casamino acids PubMed

• Regulatory mechanism:

• Additional information:
  • number of protein molecules per cell (minimal medium with glucose and ammonium): 2549 PubMed
  • number of protein molecules per cell (complex medium with amino acids, without glucose): 1704 PubMed

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Dan Li, Cong Liu, Yu-He Liang, Lan-Fen Li, Xiao-Dong Su
Crystal structure of B. subtilis YjcG characterizing the YjcG-like group of 2H phosphoesterase superfamily.
Proteins: 2008, 72(3);1071-6
[PubMed:18473364] [WorldCat.org] [DOI] (I p)

Dan Li, Chiomui Chan, Yu He Liang, Xiaofeng Zheng, Lanfen Li, Xiao Dong Su
Preparation, crystallization and preliminary X-ray analysis of YjcG protein from Bacillus subtilis.
Acta Crystallogr Sect F Struct Biol Cryst Commun: 2005, 61(Pt 5);496-8
[PubMed:16511078] [WorldCat.org] [DOI] (I p)

Ulrike Mäder, Georg Homuth, Christian Scharf, Knut Büttner, Rüdiger Bode, Michael Hecker
Transcriptome and proteome analysis of Bacillus subtilis gene expression modulated by amino acid availability.
J Bacteriol: 2002, 184(15);4288-95
[PubMed:12107147] [WorldCat.org] [DOI] (P p)