Difference between revisions of "YjcG"
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjcG_1256862_1257377_-1 yjcG] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yjcG_1256862_1257377_-1 yjcG] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed] | * '''Regulation:''' repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed] | ||
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=References= | =References= | ||
| − | <pubmed>12107147, 18473364 </pubmed> | + | <pubmed>12107147, 18473364 16511078 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 14:13, 30 August 2013
- Description: putative 2'-5' RNA-ligase
| Gene name | yjcG |
| Synonyms | |
| Essential | no |
| Product | putative 2'-5' RNA-ligase |
| Function | RNA metabolism |
| Gene expression levels in SubtiExpress: yjcG | |
| MW, pI | 19 kDa, 5.572 |
| Gene length, protein length | 513 bp, 171 aa |
| Immediate neighbours | yjcF, yjcH |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
poorly characterized/ putative enzymes
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU11850
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: UPF0477 family (according to Swiss-Prot)
- Paralogous protein(s): YtlP
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure: 2D4G
- UniProt: O31629
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation: repressed by casamino acids PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Dan Li, Cong Liu, Yu-He Liang, Lan-Fen Li, Xiao-Dong Su
Crystal structure of B. subtilis YjcG characterizing the YjcG-like group of 2H phosphoesterase superfamily.
Proteins: 2008, 72(3);1071-6
[PubMed:18473364]
[WorldCat.org]
[DOI]
(I p)
Dan Li, Chiomui Chan, Yu He Liang, Xiaofeng Zheng, Lanfen Li, Xiao Dong Su
Preparation, crystallization and preliminary X-ray analysis of YjcG protein from Bacillus subtilis.
Acta Crystallogr Sect F Struct Biol Cryst Commun: 2005, 61(Pt 5);496-8
[PubMed:16511078]
[WorldCat.org]
[DOI]
(I p)
Ulrike Mäder, Georg Homuth, Christian Scharf, Knut Büttner, Rüdiger Bode, Michael Hecker
Transcriptome and proteome analysis of Bacillus subtilis gene expression modulated by amino acid availability.
J Bacteriol: 2002, 184(15);4288-95
[PubMed:12107147]
[WorldCat.org]
[DOI]
(P p)
