Difference between revisions of "YdgF"

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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU05620 ydgF]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU05620 ydgF]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 50 kDa, 9.337   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 50 kDa, 9.337   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[vmlR]]'', ''[[dinB]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[vmlR]]'', ''[[dinB]]''
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12369&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU05620 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU05620 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU05620 Advanced_DNA]
 
|-
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ydgF_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ydgF_context.gif]]

Revision as of 12:14, 13 May 2013

  • Description: similar to amino acid permease

Gene name ydgF
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ydgF
MW, pI 50 kDa, 9.337
Gene length, protein length 1374 bp, 458 aa
Immediate neighbours vmlR, dinB
Sequences Protein DNA Advanced_DNA
Genetic context
YdgF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdgF expression.png















Categories containing this gene/protein

transporters/ other, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU05620

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: secondary amino acid transporter

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796] [WorldCat.org] [DOI] (I p)