RNA switch: Difference between revisions
| Line 21: | Line 21: | ||
* potential additional RNA switches | * potential additional RNA switches | ||
The function of these potential RNA structures is unknown. They were suggested to control the mentioned genes. | The function of these potential RNA structures is unknown. They were suggested to control the mentioned genes. | ||
** [http://rfam.sanger.ac.uk/family?acc=RF00379 ydaO-yuaA switch]: ''[[ydaO]], [[ktrA]]'' | ** [http://rfam.sanger.ac.uk/family?acc=RF00379 ydaO-yuaA switch]: ''[[ydaO]], [[ktrA]]'' | ||
** ykkC-yxkD switch: ''[[ykkC]], [[yxkD]]'' | ** [http://rfam.sanger.ac.uk/family?acc=RF00442 ykkC-yxkD switch]: ''[[ykkC]], [[yxkD]]'' | ||
** [http://rfam.sanger.ac.uk/family?acc=RF00080 yybP-ykoY switch]: ''[[yybP]]'', ''[[ykoY]]'' | ** [http://rfam.sanger.ac.uk/family?acc=RF00080 yybP-ykoY switch]: ''[[yybP]]'', ''[[ykoY]]'' | ||
** ylbH switch: ''[[ylbH]]'' | ** [http://rfam.sanger.ac.uk/family?acc=RF00516 ylbH switch]: ''[[ylbH]]'' | ||
** | ** [http://rfam.sanger.ac.uk/family?acc=RF00557 L10 leader]: ''[[rplJ]]'' | ||
** [http://rfam.sanger.ac.uk/family?acc=RF00555 L13 leader]: ''[[rplM]]'' | ** [http://rfam.sanger.ac.uk/family?acc=RF00555 L13 leader]: ''[[rplM]]'' | ||
** | ** L19 leader: ''[[rplS]]'' | ||
** | ** [http://rfam.sanger.ac.uk/family?acc=RF00558 L20 leader]: in front of the ''[[infC]]-[[rpmL]]-[[rplT]]'' operon | ||
** L21_leader | ** [http://rfam.sanger.ac.uk/family?acc=RF00559 L21_leader]:in front of the ''[[rplU]]-[[ysxB]]-[[rpmA]]'' operon | ||
==Important Reviews== | ==Important Reviews== | ||
<pubmed>15063848 , 19250859 ,19141470 , 17092822, 17764952 ,17381303, 16226486 , 16153177 , 15750802, 14523920 </pubmed> | <pubmed>15063848 , 19250859 ,19141470 , 17092822, 17764952 ,17381303, 16226486 , 16153177 , 15750802, 14523920 </pubmed> | ||
Revision as of 13:54, 7 July 2009
RNA switches are regulatory systems that rely on alternative mRNA structures.
RNA switches may be triggered by proteins, tRNAs (T-box), or metabolites (riboswitches)
List of Bacillus subtilis RNAswitches
- Protein-dependent RNA switches
- potential additional RNA switches
The function of these potential RNA structures is unknown. They were suggested to control the mentioned genes.
- ydaO-yuaA switch: ydaO, ktrA
- ykkC-yxkD switch: ykkC, yxkD
- yybP-ykoY switch: yybP, ykoY
- ylbH switch: ylbH
- L10 leader: rplJ
- L13 leader: rplM
- L19 leader: rplS
- L20 leader: in front of the infC-rpmL-rplT operon
- L21_leader:in front of the rplU-ysxB-rpmA operon
Important Reviews
<pubmed>15063848 , 19250859 ,19141470 , 17092822, 17764952 ,17381303, 16226486 , 16153177 , 15750802, 14523920 </pubmed>