Difference between revisions of "YwdH"

From SubtiWiki
Jump to: navigation, search
Line 22: Line 22:
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywdI]]'', ''[[ung]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywdI]]'', ''[[ung]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU37960 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU37960 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU37960 Advanced_DNA]
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU37960 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU37960 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU37960 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ywdH_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ywdH_context.gif]]

Revision as of 11:34, 14 May 2013

  • Description: similar to aldehyde dehydrogenase

Gene name ywdH
Synonyms ipa-58r
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ywdH
MW, pI 50 kDa, 9.625
Gene length, protein length 1371 bp, 457 aa
Immediate neighbours ywdI, ung
Sequences Protein DNA DNA_with_flanks
Genetic context
YwdH context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YwdH expression.png
























Categories containing this gene/protein

poorly characterized/ putative enzymes

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU37960

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: An aldehyde + NAD+ + H2O = an acid + NADH (according to Swiss-Prot)
  • Protein family: aldehyde dehydrogenase family (according to Swiss-Prot)

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 3RHH (from from Bacillus halodurans C-125 complexed with NADP, 28% identity, 62% similarity)
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

E Presecan, I Moszer, L Boursier, H Cruz Ramos, V de la Fuente, M-F Hullo, C Lelong, S Schleich, A Sekowska, B H Song, G Villani, F Kunst, A Danchin, P Glaser
The Bacillus subtilis genome from gerBC (311 degrees) to licR (334 degrees).
Microbiology (Reading): 1997, 143 ( Pt 10);3313-3328
[PubMed:9353933] [WorldCat.org] [DOI] (P p)