RbsD

• Description: ribose ABC transporter (membrane protein)
  
  

Gene name	rbsD
Synonyms
Essential	no
Product	ribose ABC transporter (membrane protein)
Function	ribose uptake
Metabolic function and regulation of this protein in SubtiPathways: Sugar catabolism
MW, pI	14 kDa, 4.987
Gene length, protein length	393 bp, 131 aa
Immediate neighbours	rbsK, rbsA
Get the DNA and protein sequences (Barbe et al., 2009)
Genetic context This image was kindly provided by SubtiList

The gene

Basic information

• Locus tag: BSU35930

Database entries

• DBTBS entry: [1]

• SubtiList entry: [2]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity: Beta-D-ribopyranose = beta-D-ribofuranose (according to Swiss-Prot)

• Protein family: RbsD subfamily (according to Swiss-Prot)

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:

• Localization: cytoplasm (according to Swiss-Prot)

Database entries

• Structure: 1OGD (complex with D-ribose)

• Swiss prot entry: P36946

• KEGG entry: [3]

• E.C. number:

Expression and regulation

• Operon: rbsR-rbsK-rbsD-rbsA-rbsC-rbsB

• Sigma factor: SigA

• Regulation:
  • expressed upon transition into the stationary phase (AbrB) PubMed

• Regulatory mechanism:
  • AbrB: transcription activation PubMed

• Additional information:

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Min-Sung Kim, Joon Shin, Weontae Lee, Heung-Soo Lee, Byung-Ha Oh
Crystal structures of RbsD leading to the identification of cytoplasmic sugar-binding proteins with a novel folding architecture.
J Biol Chem: 2003, 278(30);28173-80
[PubMed:12738765] [WorldCat.org] [DOI] (P p)

K Woodson, K M Devine
Analysis of a ribose transport operon from Bacillus subtilis.
Microbiology (Reading): 1994, 140 ( Pt 8);1829-38
[PubMed:7921236] [WorldCat.org] [DOI] (P p)

1. Kim MS, Shin J, Lee W, Lee HS, Oh BH. (2003) Crystal structures of RbsD leading to the identification of cytoplasmic sugar-binding proteins with a novel folding architecture. J Biol Chem. Jul 25;278(30): 28173-80. PubMed
2. Woodson K, Devine KM. (1994) Analysis of a ribose transport operon from Bacillus subtilis. Microbiology. Aug;140 ( Pt 8): 1829-38. PubMed
3. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed