Difference between revisions of "IolD"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[iolE]]'', ''[[iolC]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[iolE]]'', ''[[iolC]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/iolD_nucleotide.txt    Gene sequence      (+200bp)  ]'''
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB16009&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/iolD_protein.txt Protein sequence]'''
 
 
|-
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:iolD_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:iolD_context.gif]]

Revision as of 23:06, 16 April 2009

  • Description: formation of 5-deoxy-D-glucuronic acid (3rd reaction)

Gene name iolD
Synonyms yxdD
Essential no
Product formation of 5-deoxy-D-glucuronic acid (3rd reaction)
Function myo-inositol catabolism
MW, pI 63 kDa, 5.006
Gene length, protein length 1740 bp, 580 aa
Immediate neighbours iolE, iolC
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
IolD context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation: repressed by glucose (CcpA)
  • Regulatory mechanism: CcpA: transcription repression
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Yoshida K, Yamaguchi M, Morinaga T, Kinehara M, Ikeuchi M, Ashida H, Fujita Y. (2008) myo-Inositol catabolism in Bacillus subtilis. J Biol Chem. Apr 18;283(16): 10415-24. PubMed