Difference between revisions of "OppC"
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= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| + | {{SubtiWiki regulon|[[CodY regulon]]}}, | ||
{{SubtiWiki regulon|[[ScoC regulon]]}}, | {{SubtiWiki regulon|[[ScoC regulon]]}}, | ||
{{SubtiWiki regulon|[[TnrA regulon]]}} | {{SubtiWiki regulon|[[TnrA regulon]]}} | ||
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=== Additional information=== | === Additional information=== | ||
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=The protein= | =The protein= | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=oppC_1222533_1223450_1 oppC] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=oppC_1222533_1223450_1 oppC] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
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** [[TnrA]]: transcription activation [http://www.ncbi.nlm.nih.gov/sites/entrez/12823818 PubMed] | ** [[TnrA]]: transcription activation [http://www.ncbi.nlm.nih.gov/sites/entrez/12823818 PubMed] | ||
** [[ScoC]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/10383984 PubMed] | ** [[ScoC]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/10383984 PubMed] | ||
| + | ** [[CodY]]: transcription repression, no derepression occurs, however, in a ''[[codY]]'' mutant, due to increased repression by [[ScoC]] {{PubMed|25966844}} | ||
* '''Additional information:''' | * '''Additional information:''' | ||
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=Biological materials = | =Biological materials = | ||
| − | * '''Mutant:''' BP68 (spc) available in [[Fabian Commichau]]'s lab | + | * '''Mutant:''' |
| + | ** BP68 (spc) available in [[Fabian Commichau]]'s lab | ||
* '''Expression vector:''' | * '''Expression vector:''' | ||
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=References= | =References= | ||
| − | <pubmed>12823818,1901616,10092453,9252573,21908671,12823818,10383984, 7997159 1899858</pubmed> | + | <pubmed>12823818,1901616,10092453,9252573,21908671,12823818,10383984, 7997159 25966844 1899858</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 13:26, 15 May 2015
- Description: oligopeptide ABC transporter (permease)
| Gene name | oppC |
| Synonyms | spo0KC |
| Essential | no |
| Product | oligopeptide ABC transporter (permease) |
| Function | initiation of sporulation, competence development |
| Gene expression levels in SubtiExpress: oppC | |
| Interactions involving this protein in SubtInteract: OppC | |
| Metabolic function and regulation of this protein in SubtiPathways: oppC | |
| MW, pI | 33 kDa, 10.107 |
| Gene length, protein length | 915 bp, 305 aa |
| Immediate neighbours | oppB, oppD |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
ABC transporters, utilization of nitrogen sources other than amino acids, genetic competence, phosphorelay, membrane proteins
This gene is a member of the following regulons
CodY regulon, ScoC regulon, TnrA regulon
The gene
Basic information
- Locus tag: BSU11450
Phenotypes of a mutant
Database entries
- BsubCyc: BSU11450
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: ABC transmembrane type-1 domain (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: cell membrane PubMed
Database entries
- BsubCyc: BSU11450
- Structure:
- UniProt: P24139
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- BP68 (spc) available in Fabian Commichau's lab
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
