Difference between revisions of "OppB"

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=References=
 
=References=
'''Additional publications:''' {{PubMed|21908671}}
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<pubmed>12823818,1901616,10092453,9252573, 7997159,12823818,10383984,18763711, 21908671</pubmed>
<pubmed>12823818,1901616,10092453,9252573, 7997159,12823818,10383984,18763711, </pubmed>
 
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 13:55, 20 March 2015

Gene name oppB
Synonyms spo0KB
Essential no
Product oligopeptide ABC transporter (permease)
Function initiation of sporulation, competence development
Gene expression levels in SubtiExpress: oppB
Interactions involving this protein in SubtInteract: OppB
Metabolic function and regulation of this protein in SubtiPathways:
oppB
MW, pI 33 kDa, 9.863
Gene length, protein length 933 bp, 311 aa
Immediate neighbours oppA, oppC
Sequences Protein DNA DNA_with_flanks
Genetic context
OppB context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
OppB expression.png
























Categories containing this gene/protein

ABC transporters, utilization of nitrogen sources other than amino acids, genetic competence, phosphorelay, membrane proteins

This gene is a member of the following regulons

ScoC regulon, TnrA regulon

The gene

Basic information

  • Locus tag: BSU11440

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
    • required for the uptake of quorum sensing peptides such as PhrH PubMed
  • Protein family: ABC transmembrane type-1 domain (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • expressed in the absence of good nitrogen sources (glutamine or ammonium) (TnrA) PubMed
    • repressed during exponential growth (ScoC) PubMed
  • Additional information:
    • number of protein molecules per cell (complex medium with amino acids, without glucose): 835 PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References