Difference between revisions of "CotD"

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* '''[[Localization]]:'''
 
* '''[[Localization]]:'''
** inner spore coat  {{PubMed|19933362}}
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** inner spore coat  {{PubMed|19933362}}, localization depends on [[SafA]]  {{PubMed|22171814}}
  
 
=== Database entries ===
 
=== Database entries ===
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotD_2332784_2333011_-1 cotD] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cotD_2332784_2333011_-1 cotD] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[SigK]] {{PubMed|15699190}}
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* '''[[Sigma factor]]:''' [[SigK]] {{PubMed|15699190}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
** expressed late during sporulation in the mother cell ([[SigK]], [[SpoIIID]]) {{PubMed|15699190,7966271}}
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** expressed late during sporulation in the mother cell ([[SigK]], [[SpoIIID]], [[GerE]]) {{PubMed|15383836,15699190,7966271}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
 
** [[SpoIIID]]: transcription repression {{PubMed|7966271}}
 
** [[SpoIIID]]: transcription repression {{PubMed|7966271}}
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** [[GerE]]: transcription activation {{PubMed|15383836}}
  
 
* '''Additional information:'''
 
* '''Additional information:'''
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=References=
 
=References=
  
<pubmed> 19933362,1518043,2821284,2492118,1691789,14651647, 15699190,7966271</pubmed>
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<pubmed> 19933362,1518043,2821284,2492118,1691789,14651647, 15699190,7966271 22171814 15383836</pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 17:36, 13 August 2013

  • Description: spore coat protein (inner)

Gene name cotD
Synonyms
Essential no
Product spore coat protein (inner)
Function resistance of the spore
Gene expression levels in SubtiExpress: cotD
MW, pI 8 kDa, 7.373
Gene length, protein length 225 bp, 75 aa
Immediate neighbours ypsA, yprB
Sequences Protein DNA DNA_with_flanks
Genetic context
CotD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
CotD expression.png















Categories containing this gene/protein

sporulation proteins

This gene is a member of the following regulons

GerE regulon, SigK regulon, SpoIIID regulon

The gene

Basic information

  • Locus tag: BSU22200

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: nhaC Na(+)/H(+) antiporter family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon: cotD (according to DBTBS)
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References