Difference between revisions of "PhrF"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rapF]]'', ''[[ywhH]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rapF]]'', ''[[ywhH]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU37470 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU37470 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU37470 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU37470 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU37470 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU37470 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:phrF_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:phrF_context.gif]]

Revision as of 11:32, 14 May 2013

Gene name phrF
Synonyms ywhI
Essential no
Product phosphatase (RapF) regulator
Function control of ComA activity
Gene expression levels in SubtiExpress: phrF
Interactions involving this protein in SubtInteract: PhrF
MW, pI 4 kDa, 10.237
Gene length, protein length 117 bp, 39 aa
Immediate neighbours rapF, ywhH
Sequences Protein DNA DNA_with_flanks
Genetic context
PhrF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
PhrF expression.png
























Categories containing this gene/protein

genetic competence, transcription factors and their control, quorum sensing, short peptides

This gene is a member of the following regulons

ComA regulon, SigH regulon

The gene

Basic information

  • Locus tag: BSU37470

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: binds to RapF, this results in the inability of RapF to interact with ComA PubMed
  • Protein family: phr family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • PhrF accumulates at high cell density
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References