Difference between revisions of "NtdR"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ntdA]]'', ''[[yhjN]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ntdA]]'', ''[[yhjN]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU10560 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU10560 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU10560 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU10560 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU10560 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU10560 DNA_with_flanks]
 
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|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yhjM_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yhjM_context.gif]]

Revision as of 09:51, 14 May 2013

Gene name ntdR
Synonyms yhjM
Essential no
Product transcriptional regulator (LacI family)
Function regulation of the ntdA-ntdB-ntdC-glcP operon
Gene expression levels in SubtiExpress: ntdR
MW, pI 37 kDa, 6.645
Gene length, protein length 987 bp, 329 aa
Immediate neighbours ntdA, yhjN
Sequences Protein DNA DNA_with_flanks
Genetic context
YhjM context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
NtdR expression.png
























Categories containing this gene/protein

miscellaneous metabolic pathways, transcription factors and their control, biosynthesis of antibacterial compounds

This gene is a member of the following regulons

AbrB regulon

The NtdR regulon:

The gene

Basic information

  • Locus tag: BSU10560

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Takashi Inaoka, Kozo Ochi
Activation of dormant secondary metabolism neotrehalosadiamine synthesis by an RNA polymerase mutation in Bacillus subtilis.
Biosci Biotechnol Biochem: 2011, 75(4);618-23
[PubMed:21512256] [WorldCat.org] [DOI] (I p)

Original publications

Additional publications: PubMed