Difference between revisions of "Xis"
| Line 21: | Line 21: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[immR]]'', ''[[ydzL]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[immR]]'', ''[[ydzL]]'' | ||
|- | |- | ||
| − | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04830 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04830 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04830 | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04830 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04830 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04830 DNA_with_flanks] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:sacV_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:sacV_context.gif]] | ||
Revision as of 09:32, 14 May 2013
| Gene name | xis |
| Synonyms | ydzC, sacV |
| Essential | no |
| Product | excisionase |
| Function | excision of the conjugative transposon ICEBs1 from the trnS-leu2 locus |
| Gene expression levels in SubtiExpress: xis | |
| MW, pI | 7 kDa, 9.64 |
| Gene length, protein length | 192 bp, 64 aa |
| Immediate neighbours | immR, ydzL |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU04830
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: excision of conjugative transposon PubMed
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O31490
- KEGG entry: [2]
- E.C. number:
Additional information
Was reported to be involved in the regulation of the levansucrase gene (sacB)
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Catherine A Lee, Jennifer M Auchtung, Rita E Monson, Alan D Grossman
Identification and characterization of int (integrase), xis (excisionase) and chromosomal attachment sites of the integrative and conjugative element ICEBs1 of Bacillus subtilis.
Mol Microbiol: 2007, 66(6);1356-69
[PubMed:18005101]
[WorldCat.org]
[DOI]
(P p)
Jennifer M Auchtung, Catherine A Lee, Katherine L Garrison, Alan D Grossman
Identification and characterization of the immunity repressor (ImmR) that controls the mobile genetic element ICEBs1 of Bacillus subtilis.
Mol Microbiol: 2007, 64(6);1515-28
[PubMed:17511812]
[WorldCat.org]
[DOI]
(P p)
