Difference between revisions of "DeoR"
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|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of deoxyribonucleotide utilization | |style="background:#ABCDEF;" align="center"|'''Function''' || regulation of deoxyribonucleotide utilization | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39430 deoR] |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/nucleosides_catabolism.html Nucleoside catabolism], [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Nucleotides (regulation)]''' | |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/nucleosides_catabolism.html Nucleoside catabolism], [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Nucleotides (regulation)]''' | ||
| Line 24: | Line 24: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[dra]]'', ''[[yxxB]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[dra]]'', ''[[yxxB]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39430 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39430 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39430 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:deoR_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:deoR_context.gif]] | ||
Revision as of 14:15, 13 May 2013
| Gene name | deoR |
| Synonyms | yxxC |
| Essential | no |
| Product | transcriptional repressor |
| Function | regulation of deoxyribonucleotide utilization |
| Gene expression levels in SubtiExpress: deoR | |
| Metabolic function and regulation of this protein in SubtiPathways: Nucleoside catabolism, Nucleotides (regulation) | |
| MW, pI | 35 kDa, 6 |
| Gene length, protein length | 939 bp, 313 aa |
| Immediate neighbours | dra, yxxB |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
utilization of nucleotides, transcription factors and their control
This gene is a member of the following regulons
The DeoR regulon:
The gene
Basic information
- Locus tag: BSU39430
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Protein family: sorC transcriptional regulatory family (according to Swiss-Prot) DeoR family of transcription repressors
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P39140
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: deoR PubMed
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
X Zeng, H H Saxild, R L Switzer
Purification and characterization of the DeoR repressor of Bacillus subtilis.
J Bacteriol: 2000, 182(7);1916-22
[PubMed:10714997]
[WorldCat.org]
[DOI]
(P p)
X Zeng, H H Saxild
Identification and characterization of a DeoR-specific operator sequence essential for induction of dra-nupC-pdp operon expression in Bacillus subtilis.
J Bacteriol: 1999, 181(6);1719-27
[PubMed:10074062]
[WorldCat.org]
[DOI]
(P p)
H H Saxild, L N Andersen, K Hammer
Dra-nupC-pdp operon of Bacillus subtilis: nucleotide sequence, induction by deoxyribonucleosides, and transcriptional regulation by the deoR-encoded DeoR repressor protein.
J Bacteriol: 1996, 178(2);424-34
[PubMed:8550462]
[WorldCat.org]
[DOI]
(P p)
