Difference between revisions of "OppD"

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|style="background:#ABCDEF;" align="center"|'''Function''' || initiation of sporulation, competence development
 
|style="background:#ABCDEF;" align="center"|'''Function''' || initiation of sporulation, competence development
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU11460 oppD]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU11460 oppD]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/OppD OppD]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/OppD OppD]
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[oppC]]'', ''[[oppF]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[oppC]]'', ''[[oppF]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13003&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU11460 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU11460 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU11460 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:oppD_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:oppD_context.gif]]

Revision as of 12:32, 13 May 2013

Gene name oppD
Synonyms spo0KD
Essential no
Product oligopeptide ABC transporter (ATP-binding protein)
Function initiation of sporulation, competence development
Gene expression levels in SubtiExpress: oppD
Interactions involving this protein in SubtInteract: OppD
Metabolic function and regulation of this protein in SubtiPathways:
Alternative nitrogen sources
MW, pI 39 kDa, 6.028
Gene length, protein length 1074 bp, 358 aa
Immediate neighbours oppC, oppF
Sequences Protein DNA Advanced_DNA
Genetic context
OppD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
OppD expression.png
























Categories containing this gene/protein

ABC transporters, utilization of nitrogen sources other than amino acids, genetic competence, phosphorelay, membrane proteins

This gene is a member of the following regulons

ScoC regulon, TnrA regulon

The gene

Basic information

  • Locus tag: BSU11460

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
    • required for the uptake of quorum sensing peptides such as PhrH PubMed
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • expressed in the absence of good nitrogen sources (glutamine or ammonium) (TnrA) PubMed
    • repressed during exponential growth (ScoC) PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed