Difference between revisions of "YhxD"
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|style="background:#ABCDEF;" align="center"|'''Function''' || survival of salt and ethanol stresses | |style="background:#ABCDEF;" align="center"|'''Function''' || survival of salt and ethanol stresses | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU10430 yhxD] |
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 31 kDa, 4.538 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 31 kDa, 4.538 | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[comK]]'', ''[[yhjA]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[comK]]'', ''[[yhjA]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU10430 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU10430 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU10430 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yhxD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yhxD_context.gif]] | ||
Revision as of 12:29, 13 May 2013
- Description: general stress protein, similar to alcohol dehydrogenase,
| Gene name | yhxD |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | survival of salt and ethanol stresses |
| Gene expression levels in SubtiExpress: yhxD | |
| MW, pI | 31 kDa, 4.538 |
| Gene length, protein length | 897 bp, 299 aa |
| Immediate neighbours | comK, yhjA |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
general stress proteins (controlled by SigB), poorly characterized/ putative enzymes
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU10430
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: short-chain dehydrogenases/reductases (SDR) family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P40398
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: yhxD PubMed
- Regulatory mechanism:
- Additional information: the mRNA is very stable (half-life > 15 min) PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J Bacteriol: 2005, 187(8);2810-26
[PubMed:15805528]
[WorldCat.org]
[DOI]
(P p)
G Hambraeus, C von Wachenfeldt, L Hederstedt
Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAs.
Mol Genet Genomics: 2003, 269(5);706-14
[PubMed:12884008]
[WorldCat.org]
[DOI]
(P p)
D van Sinderen, A ten Berge, B J Hayema, L Hamoen, G Venema
Molecular cloning and sequence of comK, a gene required for genetic competence in Bacillus subtilis.
Mol Microbiol: 1994, 11(4);695-703
[PubMed:8196543]
[WorldCat.org]
[DOI]
(P p)
