Difference between revisions of "YukD"

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(References)
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* '''Operon:''' ''[[yukE]]-[[yukD]]-[[yukC]]-[[yukB]]-[[yueB]]'' {{PubMed|15576783}}
 
* '''Operon:''' ''[[yukE]]-[[yukD]]-[[yukC]]-[[yukB]]-[[yueB]]'' {{PubMed|15576783}}
  
* '''[[Sigma factor]]:'''  
+
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yukD_3275832_3276071_-1 yukD] {{PubMed|22383849}}
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 +
* '''Sigma factor:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
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* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
  
* '''Additional information:'''  
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* '''Additional information:'''
  
 
=Biological materials =
 
=Biological materials =

Revision as of 16:31, 16 April 2012

  • Description: putative bacteriocin

Gene name yukD
Synonyms
Essential no
Product putative bacteriocin
Function unknown
MW, pI 8 kDa, 6.311
Gene length, protein length 237 bp, 79 aa
Immediate neighbours yukC, yukE
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YukD context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

biosynthesis of antibacterial compounds

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU31900

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Anne de Jong, Sacha A F T van Hijum, Jetta J E Bijlsma, Jan Kok, Oscar P Kuipers
BAGEL: a web-based bacteriocin genome mining tool.
Nucleic Acids Res: 2006, 34(Web Server issue);W273-9
[PubMed:16845009] [WorldCat.org] [DOI] (I p)

Carlos São-José, Catarina Baptista, Mário A Santos
Bacillus subtilis operon encoding a membrane receptor for bacteriophage SPP1.
J Bacteriol: 2004, 186(24);8337-46
[PubMed:15576783] [WorldCat.org] [DOI] (P p)