Difference between revisions of "YvcJ"
| Line 1: | Line 1: | ||
| − | * '''Description:''' nucleotide-binding protein <br/><br/> | + | * '''Description:''' GTPase, nucleotide-binding protein <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 10: | Line 10: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || GTPase |
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || required for the expression of late competence genes | |style="background:#ABCDEF;" align="center"|'''Function''' || required for the expression of late competence genes | ||
| Line 45: | Line 45: | ||
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| − | reduced competence [http://www.ncbi.nlm.nih.gov/sites/entrez/19074378 PubMed] | + | * reduced [[genetic competence]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19074378 PubMed] |
=== Database entries === | === Database entries === | ||
| Line 54: | Line 54: | ||
=== Additional information=== | === Additional information=== | ||
| − | |||
| − | |||
| − | |||
=The protein= | =The protein= | ||
| Line 83: | Line 80: | ||
* '''Localization:''' | * '''Localization:''' | ||
| + | ** can be localized in the cell either as a helical-like pattern or as foci close to the poles and the septa depending on growth phase and on growth medium {{PubMed|21709426}} | ||
=== Database entries === | === Database entries === | ||
| Line 131: | Line 129: | ||
=References= | =References= | ||
==Original publications== | ==Original publications== | ||
| − | <pubmed>9237995 16272399 19074378, </pubmed> | + | <pubmed>9237995 16272399 19074378, 21709426 </pubmed> |
==Publications on the ''E. coli'' homolog== | ==Publications on the ''E. coli'' homolog== | ||
<pubmed>17824929 , </pubmed> | <pubmed>17824929 , </pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 11:25, 29 June 2011
- Description: GTPase, nucleotide-binding protein
| Gene name | yvcJ |
| Synonyms | |
| Essential | no |
| Product | GTPase |
| Function | required for the expression of late competence genes |
| MW, pI | 33 kDa, 6.702 |
| Gene length, protein length | 885 bp, 295 aa |
| Immediate neighbours | yvcK, yvcI |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU34770
Phenotypes of a mutant
- reduced genetic competence PubMed
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: binds and hydrolyzes nucleotides, required for the expression of late competence genes (comK, comS) PubMed
- Protein family: UPF0042 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
- can be localized in the cell either as a helical-like pattern or as foci close to the poles and the septa depending on growth phase and on growth medium PubMed
Database entries
- Structure:
- UniProt: O06973
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation: very weak stimuation of expression by citrate and succinate PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector: pGP735 (N-terminal Strep-tag, purification from B. subtilis, for SPINE, in pGP380), available in Stülke lab
- lacZ fusion:
- GFP fusion:
- two-hybrid system: B. pertussis adenylate cyclase-based bacterial two hybrid system (BACTH), available in Görke lab
- Antibody:
Labs working on this gene/protein
Anne Galinier, University of Marseille, France
Your additional remarks
References
Original publications
Publications on the E. coli homolog
Falk Kalamorz, Birte Reichenbach, Walter März, Bodo Rak, Boris Görke
Feedback control of glucosamine-6-phosphate synthase GlmS expression depends on the small RNA GlmZ and involves the novel protein YhbJ in Escherichia coli.
Mol Microbiol: 2007, 65(6);1518-33
[PubMed:17824929]
[WorldCat.org]
[DOI]
(P p)
